miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 5' -53 NC_006146.1 + 150684 0.66 0.966257
Target:  5'- gGGGAGUggCCAGGGGgaCgGAGGGCc -3'
miRNA:   3'- gUUCUCGa-GGUUCUCgaGgUUCUCGa -5'
28803 5' -53 NC_006146.1 + 45692 0.66 0.965927
Target:  5'- gAAGGGCUCUGAGcGC-CCGucgcaguAGAGCa -3'
miRNA:   3'- gUUCUCGAGGUUCuCGaGGU-------UCUCGa -5'
28803 5' -53 NC_006146.1 + 149448 0.66 0.96286
Target:  5'- cCGAGAGCUUgcGGcucAGCUCCGuggagaagcAGAGCUc -3'
miRNA:   3'- -GUUCUCGAGguUC---UCGAGGU---------UCUCGA- -5'
28803 5' -53 NC_006146.1 + 60898 0.66 0.96286
Target:  5'- -uGGGGC-CCAGuGGaUCCAGGAGCUg -3'
miRNA:   3'- guUCUCGaGGUUcUCgAGGUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 167649 0.66 0.96286
Target:  5'- -cGGcGCgugCCGGGGGC-CCGGGGGCg -3'
miRNA:   3'- guUCuCGa--GGUUCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 99782 0.66 0.959231
Target:  5'- cCGAGGGCUCCAaucucucaugcuAGuGCUgCAAuGGGCc -3'
miRNA:   3'- -GUUCUCGAGGU------------UCuCGAgGUU-CUCGa -5'
28803 5' -53 NC_006146.1 + 70711 0.66 0.959231
Target:  5'- aCGGGAGCUCaggAGGAGCg--GGGGGCUu -3'
miRNA:   3'- -GUUCUCGAGg--UUCUCGaggUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 161169 0.66 0.959231
Target:  5'- gAGGGGCccUUCAGGGGCUUcuuugauauguaCAGGAGCg -3'
miRNA:   3'- gUUCUCG--AGGUUCUCGAG------------GUUCUCGa -5'
28803 5' -53 NC_006146.1 + 67296 0.66 0.959231
Target:  5'- --cGAGCUCCGccAGCUCCc-GGGCc -3'
miRNA:   3'- guuCUCGAGGUucUCGAGGuuCUCGa -5'
28803 5' -53 NC_006146.1 + 143166 0.67 0.955367
Target:  5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3'
miRNA:   3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 158557 0.67 0.955367
Target:  5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3'
miRNA:   3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 155478 0.67 0.955367
Target:  5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3'
miRNA:   3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 131123 0.67 0.955367
Target:  5'- cCGGGAGCUCCGGGcccaAGCcugacUCCAAGccccAGCc -3'
miRNA:   3'- -GUUCUCGAGGUUC----UCG-----AGGUUC----UCGa -5'
28803 5' -53 NC_006146.1 + 152400 0.67 0.955367
Target:  5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3'
miRNA:   3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 149322 0.67 0.955367
Target:  5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3'
miRNA:   3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 146244 0.67 0.955367
Target:  5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3'
miRNA:   3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 24353 0.67 0.952932
Target:  5'- gAGGAGCUaCAAGuaguggcgcagggccAGCUCCAGGGcGCg -3'
miRNA:   3'- gUUCUCGAgGUUC---------------UCGAGGUUCU-CGa -5'
28803 5' -53 NC_006146.1 + 47306 0.67 0.95126
Target:  5'- ---uGGCUggCCAAGAGCUUCuuuGAGCUu -3'
miRNA:   3'- guucUCGA--GGUUCUCGAGGuu-CUCGA- -5'
28803 5' -53 NC_006146.1 + 28422 0.67 0.95126
Target:  5'- gGAGgcGGCUCCGGGucaCUCCAcgGGAGCc -3'
miRNA:   3'- gUUC--UCGAGGUUCuc-GAGGU--UCUCGa -5'
28803 5' -53 NC_006146.1 + 120803 0.67 0.95126
Target:  5'- --cGAGCUCCGcaaccGGAGUcagaUCCAGGuGCc -3'
miRNA:   3'- guuCUCGAGGU-----UCUCG----AGGUUCuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.