miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 5' -53 NC_006146.1 + 28422 0.67 0.95126
Target:  5'- gGAGgcGGCUCCGGGucaCUCCAcgGGAGCc -3'
miRNA:   3'- gUUC--UCGAGGUUCuc-GAGGU--UCUCGa -5'
28803 5' -53 NC_006146.1 + 44562 0.67 0.946909
Target:  5'- -cGGGGCUCCGGGuGGCUggcggaaaugCCAGGAGg- -3'
miRNA:   3'- guUCUCGAGGUUC-UCGA----------GGUUCUCga -5'
28803 5' -53 NC_006146.1 + 75282 0.67 0.942309
Target:  5'- gAGGAGC--CGAGAGCgUCCGGGAcGCUc -3'
miRNA:   3'- gUUCUCGagGUUCUCG-AGGUUCU-CGA- -5'
28803 5' -53 NC_006146.1 + 28779 0.67 0.942309
Target:  5'- uGGGAGCauacccuggggCCGAGGGCUCacuuGGGGCa -3'
miRNA:   3'- gUUCUCGa----------GGUUCUCGAGgu--UCUCGa -5'
28803 5' -53 NC_006146.1 + 99144 0.67 0.941835
Target:  5'- aCAGGGGCUCCAgcgaccggcAGguggcggagggccAGCUCguAGAGCc -3'
miRNA:   3'- -GUUCUCGAGGU---------UC-------------UCGAGguUCUCGa -5'
28803 5' -53 NC_006146.1 + 151374 0.67 0.937458
Target:  5'- cUAGGGGC-CCu-GGGCcCCGAGGGCg -3'
miRNA:   3'- -GUUCUCGaGGuuCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 148296 0.67 0.937458
Target:  5'- cUAGGGGC-CCu-GGGCcCCGAGGGCg -3'
miRNA:   3'- -GUUCUCGaGGuuCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 154452 0.67 0.937458
Target:  5'- cUAGGGGC-CCu-GGGCcCCGAGGGCg -3'
miRNA:   3'- -GUUCUCGaGGuuCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 145218 0.67 0.937458
Target:  5'- cUAGGGGC-CCu-GGGCcCCGAGGGCg -3'
miRNA:   3'- -GUUCUCGaGGuuCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 157530 0.67 0.937458
Target:  5'- cUAGGGGC-CCu-GGGCcCCGAGGGCg -3'
miRNA:   3'- -GUUCUCGaGGuuCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 142140 0.67 0.937458
Target:  5'- cUAGGGGC-CCu-GGGCcCCGAGGGCg -3'
miRNA:   3'- -GUUCUCGaGGuuCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 116815 0.67 0.937458
Target:  5'- gGAGGGCgUCCAGGAcGUgugCCGGGAcGCg -3'
miRNA:   3'- gUUCUCG-AGGUUCU-CGa--GGUUCU-CGa -5'
28803 5' -53 NC_006146.1 + 65199 0.68 0.926994
Target:  5'- cUAGGcGCUCUggGGGCcCUggGAGCc -3'
miRNA:   3'- -GUUCuCGAGGuuCUCGaGGuuCUCGa -5'
28803 5' -53 NC_006146.1 + 8542 0.68 0.926994
Target:  5'- aAGGGGCUCCAu---CUCCAAGGcGCUc -3'
miRNA:   3'- gUUCUCGAGGUucucGAGGUUCU-CGA- -5'
28803 5' -53 NC_006146.1 + 151310 0.68 0.925337
Target:  5'- gUAGGAGggCCAGGAGCUguccucgcgccggaCCGAGAGg- -3'
miRNA:   3'- -GUUCUCgaGGUUCUCGA--------------GGUUCUCga -5'
28803 5' -53 NC_006146.1 + 24620 0.68 0.921381
Target:  5'- gGAGAGCUCCAcuGGGGCcgCCAcGucGCg -3'
miRNA:   3'- gUUCUCGAGGU--UCUCGa-GGUuCu-CGa -5'
28803 5' -53 NC_006146.1 + 53933 0.68 0.921381
Target:  5'- --uGAGCUCCucGAGgUCCGgacgcaGGGGCUc -3'
miRNA:   3'- guuCUCGAGGuuCUCgAGGU------UCUCGA- -5'
28803 5' -53 NC_006146.1 + 96071 0.68 0.921381
Target:  5'- cCAGGAGCUgCAcaccaggauuaAGAGcCUgCGGGAGCg -3'
miRNA:   3'- -GUUCUCGAgGU-----------UCUC-GAgGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 73543 0.68 0.921381
Target:  5'- ---aGGCUCC-GGAGCUCCccGGGCg -3'
miRNA:   3'- guucUCGAGGuUCUCGAGGuuCUCGa -5'
28803 5' -53 NC_006146.1 + 3445 0.68 0.921381
Target:  5'- --uGGGCUCCAcGGucccGCUCgGGGGGCUa -3'
miRNA:   3'- guuCUCGAGGU-UCu---CGAGgUUCUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.