miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 5' -53 NC_006146.1 + 105742 1.07 0.00646
Target:  5'- cCAAGAGCUCCAAGAGCUCCAAGAGCUc -3'
miRNA:   3'- -GUUCUCGAGGUUCUCGAGGUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 105769 0.86 0.149162
Target:  5'- cCAAGAGCUCCAAGAGCaCCAGG-GCa -3'
miRNA:   3'- -GUUCUCGAGGUUCUCGaGGUUCuCGa -5'
28803 5' -53 NC_006146.1 + 155981 0.83 0.220023
Target:  5'- aGAGcAGCUCCGAGAGCUCCGccaccuccgGGGGCa -3'
miRNA:   3'- gUUC-UCGAGGUUCUCGAGGU---------UCUCGa -5'
28803 5' -53 NC_006146.1 + 105717 0.81 0.30297
Target:  5'- -cAGAGCgCCuAGGGCUCCAAGAGCc -3'
miRNA:   3'- guUCUCGaGGuUCUCGAGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 148296 0.8 0.325238
Target:  5'- aCAGGAGCUCCAgcaGGAGCgCgGAGAGCc -3'
miRNA:   3'- -GUUCUCGAGGU---UCUCGaGgUUCUCGa -5'
28803 5' -53 NC_006146.1 + 65147 0.79 0.364998
Target:  5'- -uGGAGCUCUuGGAGCUCUuGGAGCUc -3'
miRNA:   3'- guUCUCGAGGuUCUCGAGGuUCUCGA- -5'
28803 5' -53 NC_006146.1 + 17783 0.78 0.434337
Target:  5'- gCAAGAGCaugagggUCCc-GGGCUCCGAGAGCa -3'
miRNA:   3'- -GUUCUCG-------AGGuuCUCGAGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 100263 0.77 0.482946
Target:  5'- aCGGGGGCUCCAuGGAGcCUCCuagcGGGGGCUg -3'
miRNA:   3'- -GUUCUCGAGGU-UCUC-GAGG----UUCUCGA- -5'
28803 5' -53 NC_006146.1 + 95469 0.76 0.502717
Target:  5'- gGGGGGCUCUGAGAGCUCCGGGu--- -3'
miRNA:   3'- gUUCUCGAGGUUCUCGAGGUUCucga -5'
28803 5' -53 NC_006146.1 + 27900 0.76 0.54325
Target:  5'- gGAGGGgaCCGGGAGCUgcucccacggCCAAGGGCUa -3'
miRNA:   3'- gUUCUCgaGGUUCUCGA----------GGUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 65174 0.75 0.563923
Target:  5'- -uGGAGCUCUuGGGGCUCUuGGAGCc -3'
miRNA:   3'- guUCUCGAGGuUCUCGAGGuUCUCGa -5'
28803 5' -53 NC_006146.1 + 123440 0.75 0.563923
Target:  5'- gAAGAgGCUCCuGGAGCUC-GAGAGCa -3'
miRNA:   3'- gUUCU-CGAGGuUCUCGAGgUUCUCGa -5'
28803 5' -53 NC_006146.1 + 43901 0.75 0.574339
Target:  5'- uGGGAGC-CCAcAGAGCUCCGGGAccGCg -3'
miRNA:   3'- gUUCUCGaGGU-UCUCGAGGUUCU--CGa -5'
28803 5' -53 NC_006146.1 + 170172 0.75 0.605819
Target:  5'- cCGGGGGCUgaGGGGGCUCCcGAGGGCg -3'
miRNA:   3'- -GUUCUCGAggUUCUCGAGG-UUCUCGa -5'
28803 5' -53 NC_006146.1 + 167377 0.75 0.605819
Target:  5'- cCGGGGGCUgaGGGGGCUCCcGAGGGCg -3'
miRNA:   3'- -GUUCUCGAggUUCUCGAGG-UUCUCGa -5'
28803 5' -53 NC_006146.1 + 168309 0.75 0.605819
Target:  5'- cCGGGGGCUgaGGGGGCUCCcGAGGGCg -3'
miRNA:   3'- -GUUCUCGAggUUCUCGAGG-UUCUCGa -5'
28803 5' -53 NC_006146.1 + 169241 0.75 0.605819
Target:  5'- cCGGGGGCUgaGGGGGCUCCcGAGGGCg -3'
miRNA:   3'- -GUUCUCGAggUUCUCGAGG-UUCUCGa -5'
28803 5' -53 NC_006146.1 + 47447 0.73 0.679601
Target:  5'- -uGGAGUUCUggGccaugcucucgAGCUCCAGGAGCc -3'
miRNA:   3'- guUCUCGAGGuuC-----------UCGAGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 113973 0.73 0.710782
Target:  5'- gGGGGGUgcCCGGGGGCUCCGcguuguugaaGGAGCUg -3'
miRNA:   3'- gUUCUCGa-GGUUCUCGAGGU----------UCUCGA- -5'
28803 5' -53 NC_006146.1 + 62958 0.73 0.721047
Target:  5'- uUAGGGGCaacCCAAuacuGAGCUCCcAGGAGCUg -3'
miRNA:   3'- -GUUCUCGa--GGUU----CUCGAGG-UUCUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.