miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 5' -53 NC_006146.1 + 3445 0.68 0.921381
Target:  5'- --uGGGCUCCAcGGucccGCUCgGGGGGCUa -3'
miRNA:   3'- guuCUCGAGGU-UCu---CGAGgUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 8542 0.68 0.926994
Target:  5'- aAGGGGCUCCAu---CUCCAAGGcGCUc -3'
miRNA:   3'- gUUCUCGAGGUucucGAGGUUCU-CGA- -5'
28803 5' -53 NC_006146.1 + 13127 0.69 0.882424
Target:  5'- aCGGGGGCUCCc-GGGC-CCAcgaggAGAGCa -3'
miRNA:   3'- -GUUCUCGAGGuuCUCGaGGU-----UCUCGa -5'
28803 5' -53 NC_006146.1 + 17783 0.78 0.434337
Target:  5'- gCAAGAGCaugagggUCCc-GGGCUCCGAGAGCa -3'
miRNA:   3'- -GUUCUCG-------AGGuuCUCGAGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 24353 0.67 0.952932
Target:  5'- gAGGAGCUaCAAGuaguggcgcagggccAGCUCCAGGGcGCg -3'
miRNA:   3'- gUUCUCGAgGUUC---------------UCGAGGUUCU-CGa -5'
28803 5' -53 NC_006146.1 + 24620 0.68 0.921381
Target:  5'- gGAGAGCUCCAcuGGGGCcgCCAcGucGCg -3'
miRNA:   3'- gUUCUCGAGGU--UCUCGa-GGUuCu-CGa -5'
28803 5' -53 NC_006146.1 + 27900 0.76 0.54325
Target:  5'- gGAGGGgaCCGGGAGCUgcucccacggCCAAGGGCUa -3'
miRNA:   3'- gUUCUCgaGGUUCUCGA----------GGUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 28422 0.67 0.95126
Target:  5'- gGAGgcGGCUCCGGGucaCUCCAcgGGAGCc -3'
miRNA:   3'- gUUC--UCGAGGUUCuc-GAGGU--UCUCGa -5'
28803 5' -53 NC_006146.1 + 28779 0.67 0.942309
Target:  5'- uGGGAGCauacccuggggCCGAGGGCUCacuuGGGGCa -3'
miRNA:   3'- gUUCUCGa----------GGUUCUCGAGgu--UCUCGa -5'
28803 5' -53 NC_006146.1 + 33159 0.69 0.880246
Target:  5'- --cGAGCggacccCCAGGAGCUCCAGaaccggguaggcccGGGCa -3'
miRNA:   3'- guuCUCGa-----GGUUCUCGAGGUU--------------CUCGa -5'
28803 5' -53 NC_006146.1 + 33207 0.71 0.79939
Target:  5'- cCGGGuGCUCCuGGuGCUCCGGG-GCa -3'
miRNA:   3'- -GUUCuCGAGGuUCuCGAGGUUCuCGa -5'
28803 5' -53 NC_006146.1 + 33324 0.71 0.779618
Target:  5'- -uGGGGCUCCGGGGuccggguGCUCCGGG-GCa -3'
miRNA:   3'- guUCUCGAGGUUCU-------CGAGGUUCuCGa -5'
28803 5' -53 NC_006146.1 + 34528 0.69 0.896398
Target:  5'- -cGGAGCUUCAGGAGggucccCUCCAuAGGGUUa -3'
miRNA:   3'- guUCUCGAGGUUCUC------GAGGU-UCUCGA- -5'
28803 5' -53 NC_006146.1 + 41042 0.71 0.808561
Target:  5'- gGAGGGC-CUAGGAcaGCuUCCGAGGGCUc -3'
miRNA:   3'- gUUCUCGaGGUUCU--CG-AGGUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 43901 0.75 0.574339
Target:  5'- uGGGAGC-CCAcAGAGCUCCGGGAccGCg -3'
miRNA:   3'- gUUCUCGaGGU-UCUCGAGGUUCU--CGa -5'
28803 5' -53 NC_006146.1 + 44562 0.67 0.946909
Target:  5'- -cGGGGCUCCGGGuGGCUggcggaaaugCCAGGAGg- -3'
miRNA:   3'- guUCUCGAGGUUC-UCGA----------GGUUCUCga -5'
28803 5' -53 NC_006146.1 + 45040 0.66 0.966257
Target:  5'- gGAGAGaggCCGGGgccGGCUCCcuAGGGGCg -3'
miRNA:   3'- gUUCUCga-GGUUC---UCGAGG--UUCUCGa -5'
28803 5' -53 NC_006146.1 + 45692 0.66 0.965927
Target:  5'- gAAGGGCUCUGAGcGC-CCGucgcaguAGAGCa -3'
miRNA:   3'- gUUCUCGAGGUUCuCGaGGU-------UCUCGa -5'
28803 5' -53 NC_006146.1 + 46882 0.69 0.889532
Target:  5'- gAGGGGCUCCu-GGGUgUCCGAcGAGCg -3'
miRNA:   3'- gUUCUCGAGGuuCUCG-AGGUU-CUCGa -5'
28803 5' -53 NC_006146.1 + 47306 0.67 0.95126
Target:  5'- ---uGGCUggCCAAGAGCUUCuuuGAGCUu -3'
miRNA:   3'- guucUCGA--GGUUCUCGAGGuu-CUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.