miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 5' -53 NC_006146.1 + 155981 0.83 0.220023
Target:  5'- aGAGcAGCUCCGAGAGCUCCGccaccuccgGGGGCa -3'
miRNA:   3'- gUUC-UCGAGGUUCUCGAGGU---------UCUCGa -5'
28803 5' -53 NC_006146.1 + 49524 0.7 0.826383
Target:  5'- --cGGGUgaUCCGGGGGCUCCucuGGGGGCg -3'
miRNA:   3'- guuCUCG--AGGUUCUCGAGG---UUCUCGa -5'
28803 5' -53 NC_006146.1 + 34528 0.69 0.896398
Target:  5'- -cGGAGCUUCAGGAGggucccCUCCAuAGGGUUa -3'
miRNA:   3'- guUCUCGAGGUUCUC------GAGGU-UCUCGA- -5'
28803 5' -53 NC_006146.1 + 51911 0.66 0.975124
Target:  5'- gCGGGGGcCUCCGAG-GCaCCGAcGGGCg -3'
miRNA:   3'- -GUUCUC-GAGGUUCuCGaGGUU-CUCGa -5'
28803 5' -53 NC_006146.1 + 95469 0.76 0.502717
Target:  5'- gGGGGGCUCUGAGAGCUCCGGGu--- -3'
miRNA:   3'- gUUCUCGAGGUUCUCGAGGUUCucga -5'
28803 5' -53 NC_006146.1 + 65174 0.75 0.563923
Target:  5'- -uGGAGCUCUuGGGGCUCUuGGAGCc -3'
miRNA:   3'- guUCUCGAGGuUCUCGAGGuUCUCGa -5'
28803 5' -53 NC_006146.1 + 168309 0.75 0.605819
Target:  5'- cCGGGGGCUgaGGGGGCUCCcGAGGGCg -3'
miRNA:   3'- -GUUCUCGAggUUCUCGAGG-UUCUCGa -5'
28803 5' -53 NC_006146.1 + 169241 0.75 0.605819
Target:  5'- cCGGGGGCUgaGGGGGCUCCcGAGGGCg -3'
miRNA:   3'- -GUUCUCGAggUUCUCGAGG-UUCUCGa -5'
28803 5' -53 NC_006146.1 + 96770 0.72 0.731231
Target:  5'- gCGGGAGCUCUAccugaagaAGAuccGCUCCAuGGAGCUc -3'
miRNA:   3'- -GUUCUCGAGGU--------UCU---CGAGGU-UCUCGA- -5'
28803 5' -53 NC_006146.1 + 41042 0.71 0.808561
Target:  5'- gGAGGGC-CUAGGAcaGCuUCCGAGGGCUc -3'
miRNA:   3'- gUUCUCGaGGUUCU--CG-AGGUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 133067 0.71 0.790999
Target:  5'- cCAGGguGGUUCCGGGuggggggguggucccGCUCCGAGAGCUu -3'
miRNA:   3'- -GUUC--UCGAGGUUCu--------------CGAGGUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 47447 0.73 0.679601
Target:  5'- -uGGAGUUCUggGccaugcucucgAGCUCCAGGAGCc -3'
miRNA:   3'- guUCUCGAGGuuC-----------UCGAGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 148296 0.8 0.325238
Target:  5'- aCAGGAGCUCCAgcaGGAGCgCgGAGAGCc -3'
miRNA:   3'- -GUUCUCGAGGU---UCUCGaGgUUCUCGa -5'
28803 5' -53 NC_006146.1 + 137893 0.71 0.796607
Target:  5'- gCAGGGGgUCCccguggacagggccGGGGGUUCCGGGGGCa -3'
miRNA:   3'- -GUUCUCgAGG--------------UUCUCGAGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 65147 0.79 0.364998
Target:  5'- -uGGAGCUCUuGGAGCUCUuGGAGCUc -3'
miRNA:   3'- guUCUCGAGGuUCUCGAGGuUCUCGA- -5'
28803 5' -53 NC_006146.1 + 170172 0.75 0.605819
Target:  5'- cCGGGGGCUgaGGGGGCUCCcGAGGGCg -3'
miRNA:   3'- -GUUCUCGAggUUCUCGAGG-UUCUCGa -5'
28803 5' -53 NC_006146.1 + 33207 0.71 0.79939
Target:  5'- cCGGGuGCUCCuGGuGCUCCGGG-GCa -3'
miRNA:   3'- -GUUCuCGAGGuUCuCGAGGUUCuCGa -5'
28803 5' -53 NC_006146.1 + 46882 0.69 0.889532
Target:  5'- gAGGGGCUCCu-GGGUgUCCGAcGAGCg -3'
miRNA:   3'- gUUCUCGAGGuuCUCG-AGGUU-CUCGa -5'
28803 5' -53 NC_006146.1 + 100263 0.77 0.482946
Target:  5'- aCGGGGGCUCCAuGGAGcCUCCuagcGGGGGCUg -3'
miRNA:   3'- -GUUCUCGAGGU-UCUC-GAGG----UUCUCGA- -5'
28803 5' -53 NC_006146.1 + 167377 0.75 0.605819
Target:  5'- cCGGGGGCUgaGGGGGCUCCcGAGGGCg -3'
miRNA:   3'- -GUUCUCGAggUUCUCGAGG-UUCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.