miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 5' -53 NC_006146.1 + 170172 0.75 0.605819
Target:  5'- cCGGGGGCUgaGGGGGCUCCcGAGGGCg -3'
miRNA:   3'- -GUUCUCGAggUUCUCGAGG-UUCUCGa -5'
28803 5' -53 NC_006146.1 + 169241 0.75 0.605819
Target:  5'- cCGGGGGCUgaGGGGGCUCCcGAGGGCg -3'
miRNA:   3'- -GUUCUCGAggUUCUCGAGG-UUCUCGa -5'
28803 5' -53 NC_006146.1 + 168309 0.75 0.605819
Target:  5'- cCGGGGGCUgaGGGGGCUCCcGAGGGCg -3'
miRNA:   3'- -GUUCUCGAggUUCUCGAGG-UUCUCGa -5'
28803 5' -53 NC_006146.1 + 167805 0.66 0.969429
Target:  5'- -uAGAGg-CCGgagaAGAGCUCCA-GAGCg -3'
miRNA:   3'- guUCUCgaGGU----UCUCGAGGUuCUCGa -5'
28803 5' -53 NC_006146.1 + 167649 0.66 0.96286
Target:  5'- -cGGcGCgugCCGGGGGC-CCGGGGGCg -3'
miRNA:   3'- guUCuCGa--GGUUCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 167377 0.75 0.605819
Target:  5'- cCGGGGGCUgaGGGGGCUCCcGAGGGCg -3'
miRNA:   3'- -GUUCUCGAggUUCUCGAGG-UUCUCGa -5'
28803 5' -53 NC_006146.1 + 165327 0.69 0.903019
Target:  5'- -cAGAGCcCCGAGAuguugcuccGCUCCGAGGGa- -3'
miRNA:   3'- guUCUCGaGGUUCU---------CGAGGUUCUCga -5'
28803 5' -53 NC_006146.1 + 162612 0.66 0.972382
Target:  5'- aGAGAGCgaccCCGggaguGGGGCUCCcAGAGa- -3'
miRNA:   3'- gUUCUCGa---GGU-----UCUCGAGGuUCUCga -5'
28803 5' -53 NC_006146.1 + 161169 0.66 0.959231
Target:  5'- gAGGGGCccUUCAGGGGCUUcuuugauauguaCAGGAGCg -3'
miRNA:   3'- gUUCUCG--AGGUUCUCGAG------------GUUCUCGa -5'
28803 5' -53 NC_006146.1 + 158557 0.67 0.955367
Target:  5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3'
miRNA:   3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 158431 0.66 0.972382
Target:  5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3'
miRNA:   3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 157530 0.67 0.937458
Target:  5'- cUAGGGGC-CCu-GGGCcCCGAGGGCg -3'
miRNA:   3'- -GUUCUCGaGGuuCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 155981 0.83 0.220023
Target:  5'- aGAGcAGCUCCGAGAGCUCCGccaccuccgGGGGCa -3'
miRNA:   3'- gUUC-UCGAGGUUCUCGAGGU---------UCUCGa -5'
28803 5' -53 NC_006146.1 + 155565 0.67 0.95126
Target:  5'- --cGGGCUCgCGcGGGGCgcccgCCAGGGGCa -3'
miRNA:   3'- guuCUCGAG-GU-UCUCGa----GGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 155478 0.67 0.955367
Target:  5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3'
miRNA:   3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 155352 0.66 0.972382
Target:  5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3'
miRNA:   3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 154452 0.67 0.937458
Target:  5'- cUAGGGGC-CCu-GGGCcCCGAGGGCg -3'
miRNA:   3'- -GUUCUCGaGGuuCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 153400 0.68 0.915513
Target:  5'- uGAGGGUgCCAagGGAGUUCCcGGGGGCg -3'
miRNA:   3'- gUUCUCGaGGU--UCUCGAGG-UUCUCGa -5'
28803 5' -53 NC_006146.1 + 152400 0.67 0.955367
Target:  5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3'
miRNA:   3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 152274 0.66 0.972382
Target:  5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3'
miRNA:   3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.