miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28806 3' -56.8 NC_006146.1 + 161265 0.71 0.582542
Target:  5'- cUGUGCCGCaUGCGCCugGgggagaccgAGGUCAc- -3'
miRNA:   3'- -ACGCGGCGgACGCGGugU---------UCUAGUuu -5'
28806 3' -56.8 NC_006146.1 + 160211 0.67 0.783926
Target:  5'- cUGUGCUGCCUGCaugaugcCCGCGGGuAUCGc- -3'
miRNA:   3'- -ACGCGGCGGACGc------GGUGUUC-UAGUuu -5'
28806 3' -56.8 NC_006146.1 + 159548 0.66 0.875926
Target:  5'- cGCGCagCGCCUGCGCCaggcccguguACAGcGUCu-- -3'
miRNA:   3'- aCGCG--GCGGACGCGG----------UGUUcUAGuuu -5'
28806 3' -56.8 NC_006146.1 + 157860 0.75 0.367342
Target:  5'- aGCGCCGCCuggaaaaguUGUGCCACAGGuagaggcUCGAGa -3'
miRNA:   3'- aCGCGGCGG---------ACGCGGUGUUCu------AGUUU- -5'
28806 3' -56.8 NC_006146.1 + 152659 0.67 0.802236
Target:  5'- uUGgGCUguuguGCCUGCGCCuucuCAGGAggucUCGAAg -3'
miRNA:   3'- -ACgCGG-----CGGACGCGGu---GUUCU----AGUUU- -5'
28806 3' -56.8 NC_006146.1 + 152237 0.66 0.860942
Target:  5'- aGCGUCGCCUGCgaagGCCggGCAugcGAUCc-- -3'
miRNA:   3'- aCGCGGCGGACG----CGG--UGUu--CUAGuuu -5'
28806 3' -56.8 NC_006146.1 + 150217 0.66 0.868542
Target:  5'- uUGCGCUugGCCa--GCCAgGAGGUCAGc -3'
miRNA:   3'- -ACGCGG--CGGacgCGGUgUUCUAGUUu -5'
28806 3' -56.8 NC_006146.1 + 128136 0.69 0.729941
Target:  5'- cGCGCCGCCugcaccugucggcccUGCuGCCGCAGGcgaugCAGc -3'
miRNA:   3'- aCGCGGCGG---------------ACG-CGGUGUUCua---GUUu -5'
28806 3' -56.8 NC_006146.1 + 125968 0.75 0.37554
Target:  5'- cGCGCC-CCUG-GCCACGAGAgguUCAAGa -3'
miRNA:   3'- aCGCGGcGGACgCGGUGUUCU---AGUUU- -5'
28806 3' -56.8 NC_006146.1 + 125920 0.67 0.828502
Target:  5'- cUGCGCCuCCgucgGCGC-ACGAGGUCu-- -3'
miRNA:   3'- -ACGCGGcGGa---CGCGgUGUUCUAGuuu -5'
28806 3' -56.8 NC_006146.1 + 122028 0.7 0.644399
Target:  5'- gGCGCagGCCUgGCGCCugGAGGcCGAc -3'
miRNA:   3'- aCGCGg-CGGA-CGCGGugUUCUaGUUu -5'
28806 3' -56.8 NC_006146.1 + 121813 0.67 0.793155
Target:  5'- --aGCCGCCUGaGCCACAgccGGAgccUCAGc -3'
miRNA:   3'- acgCGGCGGACgCGGUGU---UCU---AGUUu -5'
28806 3' -56.8 NC_006146.1 + 121070 0.67 0.811159
Target:  5'- cUGaC-CCGCCUGCGgCACAcgugccAGAUCAu- -3'
miRNA:   3'- -AC-GcGGCGGACGCgGUGU------UCUAGUuu -5'
28806 3' -56.8 NC_006146.1 + 120977 0.69 0.675302
Target:  5'- cGCGCUG-CUGgGCCACAGGuuAUCGGc -3'
miRNA:   3'- aCGCGGCgGACgCGGUGUUC--UAGUUu -5'
28806 3' -56.8 NC_006146.1 + 111157 0.66 0.875198
Target:  5'- aGCGCCGCUucagGCGCUcggggagGCGAGAg---- -3'
miRNA:   3'- aCGCGGCGGa---CGCGG-------UGUUCUaguuu -5'
28806 3' -56.8 NC_006146.1 + 108075 0.67 0.802236
Target:  5'- aUG-GCCaGCCUGgGCCACAGGcaCAAGa -3'
miRNA:   3'- -ACgCGG-CGGACgCGGUGUUCuaGUUU- -5'
28806 3' -56.8 NC_006146.1 + 106274 0.66 0.867792
Target:  5'- gGCGgaagacauccuccUgGCCUGCGCCaugaaccucaGCAAGGUCAu- -3'
miRNA:   3'- aCGC-------------GgCGGACGCGG----------UGUUCUAGUuu -5'
28806 3' -56.8 NC_006146.1 + 104341 1.06 0.003257
Target:  5'- cUGCGCCGCCUGCGCCACAAGAUCAAAg -3'
miRNA:   3'- -ACGCGGCGGACGCGGUGUUCUAGUUU- -5'
28806 3' -56.8 NC_006146.1 + 104191 0.71 0.592803
Target:  5'- aGgGCCGUCUGCGCCcccACGGGGccgCAAGc -3'
miRNA:   3'- aCgCGGCGGACGCGG---UGUUCUa--GUUU- -5'
28806 3' -56.8 NC_006146.1 + 104110 0.75 0.359268
Target:  5'- aUGCGCCGCCUGgGCC-CGguguccAGGUCGc- -3'
miRNA:   3'- -ACGCGGCGGACgCGGuGU------UCUAGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.