Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 24450 | 0.67 | 0.72706 |
Target: 5'- aCGCCAagauggacucGGugGACGAaaCCGGGGUg- -3' miRNA: 3'- aGUGGU----------CCugCUGCUggGGCCUCAgu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 114335 | 0.67 | 0.72706 |
Target: 5'- cCGCCGGcGGCuuccuCGAUCCCGaGAGUCu -3' miRNA: 3'- aGUGGUC-CUGcu---GCUGGGGC-CUCAGu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 63099 | 0.67 | 0.736696 |
Target: 5'- cCACCAcGACGGCGaaGCCCacgGGAGcCAa -3' miRNA: 3'- aGUGGUcCUGCUGC--UGGGg--CCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 62937 | 0.67 | 0.736696 |
Target: 5'- cCACCAcGACGGCGaaGCCCacgGGAGcCAa -3' miRNA: 3'- aGUGGUcCUGCUGC--UGGGg--CCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 62853 | 0.67 | 0.736696 |
Target: 5'- cCACCAcGACGGCGaaGCCCacgGGAGcCAa -3' miRNA: 3'- aGUGGUcCUGCUGC--UGGGg--CCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 70679 | 0.67 | 0.755695 |
Target: 5'- -gGCCcGGGCGGgGAUCCCGGcGGaUCAc -3' miRNA: 3'- agUGGuCCUGCUgCUGGGGCC-UC-AGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 35653 | 0.67 | 0.755695 |
Target: 5'- cUCGCCGGGGUGuACGACCUCguGGAGa-- -3' miRNA: 3'- -AGUGGUCCUGC-UGCUGGGG--CCUCagu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 3247 | 0.67 | 0.765042 |
Target: 5'- gCACCGGccgUGACGAgCCCgagguGGAGUCAg -3' miRNA: 3'- aGUGGUCcu-GCUGCUgGGG-----CCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 43918 | 0.67 | 0.765042 |
Target: 5'- cCACCA--ACGaACGGCCaucgCGGAGUCAu -3' miRNA: 3'- aGUGGUccUGC-UGCUGGg---GCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 118801 | 0.67 | 0.765042 |
Target: 5'- gCACCGGccgUGACGAgCCCgagguGGAGUCAg -3' miRNA: 3'- aGUGGUCcu-GCUGCUgGGG-----CCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 21265 | 0.67 | 0.765042 |
Target: 5'- aUCGCC---GC-ACGACCCCGGGGUgAg -3' miRNA: 3'- -AGUGGuccUGcUGCUGGGGCCUCAgU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 67435 | 0.67 | 0.773357 |
Target: 5'- aCGCCAuGGcagcucacuacucGCGGCGAUaCCCGG-GUCAu -3' miRNA: 3'- aGUGGU-CC-------------UGCUGCUG-GGGCCuCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 103718 | 0.67 | 0.774275 |
Target: 5'- cCAgCAGGACc-UGACCUCGGAG-CAg -3' miRNA: 3'- aGUgGUCCUGcuGCUGGGGCCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 100294 | 0.66 | 0.783386 |
Target: 5'- gUUAUUucuGGAUuggagcacgGGCGGCCCCGGGGUUg -3' miRNA: 3'- -AGUGGu--CCUG---------CUGCUGGGGCCUCAGu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 46091 | 0.66 | 0.783386 |
Target: 5'- uUCuCCAacugacaggcgcGGAUGAUGGCCCCGucAGUCAg -3' miRNA: 3'- -AGuGGU------------CCUGCUGCUGGGGCc-UCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 113878 | 0.66 | 0.783386 |
Target: 5'- uUCAUCGGGcgguaGugGACCCCGaGcGUCu -3' miRNA: 3'- -AGUGGUCCug---CugCUGGGGC-CuCAGu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 2832 | 0.66 | 0.792365 |
Target: 5'- -gACUuGGcgacCGAUGACCCCGG-GUCGa -3' miRNA: 3'- agUGGuCCu---GCUGCUGGGGCCuCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 124032 | 0.66 | 0.792365 |
Target: 5'- uUCGaagCGGGcACGGCGcGCCaCGGAGUCAc -3' miRNA: 3'- -AGUg--GUCC-UGCUGC-UGGgGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 8478 | 0.66 | 0.792365 |
Target: 5'- uUCGaagCGGGcACGGCGcGCCaCGGAGUCAc -3' miRNA: 3'- -AGUg--GUCC-UGCUGC-UGGgGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 118386 | 0.66 | 0.792365 |
Target: 5'- -gACUuGGcgacCGAUGACCCCGG-GUCGa -3' miRNA: 3'- agUGGuCCu---GCUGCUGGGGCCuCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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