Results 21 - 40 of 74 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 124710 | 0.69 | 0.627774 |
Target: 5'- aCACCagguucugaaacGGGACGGCGuACCCCGuGGGaUCc -3' miRNA: 3'- aGUGG------------UCCUGCUGC-UGGGGC-CUC-AGu -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 9156 | 0.69 | 0.627774 |
Target: 5'- aCACCagguucugaaacGGGACGGCGuACCCCGuGGGaUCc -3' miRNA: 3'- aGUGG------------UCCUGCUGC-UGGGGC-CUC-AGu -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 46661 | 0.69 | 0.631791 |
Target: 5'- uUCGCCAGGAaGAUagcccgucucaccgaGGCCCUGGAGaaguUCAa -3' miRNA: 3'- -AGUGGUCCUgCUG---------------CUGGGGCCUC----AGU- -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 90620 | 0.69 | 0.637818 |
Target: 5'- cCACCAuGGACGGUG-CgCUCGGGGUCAu -3' miRNA: 3'- aGUGGU-CCUGCUGCuG-GGGCCUCAGU- -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 15517 | 0.69 | 0.657885 |
Target: 5'- cUCACCAcGGugcuauCGAaggUGGCCCCGGAGg-- -3' miRNA: 3'- -AGUGGU-CCu-----GCU---GCUGGGGCCUCagu -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 131071 | 0.69 | 0.657885 |
Target: 5'- cUCACCAcGGugcuauCGAaggUGGCCCCGGAGg-- -3' miRNA: 3'- -AGUGGU-CCu-----GCU---GCUGGGGCCUCagu -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 64059 | 0.68 | 0.667892 |
Target: 5'- aUCACCAcGGCGACGcCCgCgGGAGcCAa -3' miRNA: 3'- -AGUGGUcCUGCUGCuGG-GgCCUCaGU- -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 13065 | 0.68 | 0.667892 |
Target: 5'- cUC-CCGGGGuccCGuCCCCGGGGUCAa -3' miRNA: 3'- -AGuGGUCCUgcuGCuGGGGCCUCAGU- -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 63606 | 0.68 | 0.667892 |
Target: 5'- aUCACCAcGGCGACGcCCgCgGGAGcCAa -3' miRNA: 3'- -AGUGGUcCUGCUGCuGG-GgCCUCaGU- -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 62895 | 0.68 | 0.667892 |
Target: 5'- cCACCAcGACGGCGaaGCCCaCGGGGgCGa -3' miRNA: 3'- aGUGGUcCUGCUGC--UGGG-GCCUCaGU- -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 63975 | 0.68 | 0.667892 |
Target: 5'- aUCACCAcGGCGACGcCCgCgGGAGcCAa -3' miRNA: 3'- -AGUGGUcCUGCUGCuGG-GgCCUCaGU- -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 112455 | 0.68 | 0.667892 |
Target: 5'- uUC-CCGGGAauuCGACCCCGGGuuucgaaucccGUCAg -3' miRNA: 3'- -AGuGGUCCUgcuGCUGGGGCCU-----------CAGU- -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 128619 | 0.68 | 0.667892 |
Target: 5'- cUC-CCGGGGuccCGuCCCCGGGGUCAa -3' miRNA: 3'- -AGuGGUCCUgcuGCuGGGGCCUCAGU- -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 64017 | 0.68 | 0.667892 |
Target: 5'- aUCACCAcGGCGACGcCCgCgGGAGcCAa -3' miRNA: 3'- -AGUGGUcCUGCUGCuGG-GgCCUCaGU- -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 9609 | 0.68 | 0.687816 |
Target: 5'- --gUCGGuGACGGCggguGACUCCGGGGUCGu -3' miRNA: 3'- aguGGUC-CUGCUG----CUGGGGCCUCAGU- -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 125163 | 0.68 | 0.687816 |
Target: 5'- --gUCGGuGACGGCggguGACUCCGGGGUCGu -3' miRNA: 3'- aguGGUC-CUGCUG----CUGGGGCCUCAGU- -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 54833 | 0.68 | 0.69475 |
Target: 5'- aUACCGGGuCGugGcagcgccaggcuguGCCCCGGGGa-- -3' miRNA: 3'- aGUGGUCCuGCugC--------------UGGGGCCUCagu -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 72453 | 0.68 | 0.697715 |
Target: 5'- -aACCccGGGCuGCGAUCCCGG-GUCAg -3' miRNA: 3'- agUGGu-CCUGcUGCUGGGGCCuCAGU- -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 24224 | 0.68 | 0.717346 |
Target: 5'- gUCACCGaguGGuuGGCGACCCU-GAGUCc -3' miRNA: 3'- -AGUGGU---CCugCUGCUGGGGcCUCAGu -5' |
|||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 63739 | 0.67 | 0.72706 |
Target: 5'- gUCGCCGGuGugGugGucACCgCGGuGUCGu -3' miRNA: 3'- -AGUGGUC-CugCugC--UGGgGCCuCAGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home