miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2881 3' -58.5 NC_001493.1 + 27281 0.7 0.557949
Target:  5'- gUCACUcac-CGGCGugCCCGGGGUCGc -3'
miRNA:   3'- -AGUGGuccuGCUGCugGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 35653 0.67 0.755695
Target:  5'- cUCGCCGGGGUGuACGACCUCguGGAGa-- -3'
miRNA:   3'- -AGUGGUCCUGC-UGCUGGGG--CCUCagu -5'
2881 3' -58.5 NC_001493.1 + 41515 0.66 0.809899
Target:  5'- gCGCCGuucuuuguaGCGGCGGCCCUGGAGg-- -3'
miRNA:   3'- aGUGGUcc-------UGCUGCUGGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 43918 0.67 0.765042
Target:  5'- cCACCA--ACGaACGGCCaucgCGGAGUCAu -3'
miRNA:   3'- aGUGGUccUGC-UGCUGGg---GCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 46091 0.66 0.783386
Target:  5'- uUCuCCAacugacaggcgcGGAUGAUGGCCCCGucAGUCAg -3'
miRNA:   3'- -AGuGGU------------CCUGCUGCUGGGGCc-UCAGU- -5'
2881 3' -58.5 NC_001493.1 + 46661 0.69 0.631791
Target:  5'- uUCGCCAGGAaGAUagcccgucucaccgaGGCCCUGGAGaaguUCAa -3'
miRNA:   3'- -AGUGGUCCUgCUG---------------CUGGGGCCUC----AGU- -5'
2881 3' -58.5 NC_001493.1 + 53398 0.66 0.818437
Target:  5'- aUCACCGcGGugG-CGAUCCCgaccaucgcacGGAGUUc -3'
miRNA:   3'- -AGUGGU-CCugCuGCUGGGG-----------CCUCAGu -5'
2881 3' -58.5 NC_001493.1 + 54833 0.68 0.69475
Target:  5'- aUACCGGGuCGugGcagcgccaggcuguGCCCCGGGGa-- -3'
miRNA:   3'- aGUGGUCCuGCugC--------------UGGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 58840 0.66 0.818437
Target:  5'- gUCACCgcGGGACGGa-ACCCCuucGGuGUCGu -3'
miRNA:   3'- -AGUGG--UCCUGCUgcUGGGG---CCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 61716 0.7 0.587702
Target:  5'- -aGCCAGaGAUGGCGcGCCCCGuGAG-CAa -3'
miRNA:   3'- agUGGUC-CUGCUGC-UGGGGC-CUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 62402 0.66 0.818437
Target:  5'- -aACCcucGGCGaACGAUCCCGGAGcCGa -3'
miRNA:   3'- agUGGuc-CUGC-UGCUGGGGCCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 62685 0.66 0.801206
Target:  5'- cCACCAcGACGGCGaaGCCCgCgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGG-G-CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 62727 0.66 0.801206
Target:  5'- cCACCAcGACGGCGaaGCCCgCgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGG-G-CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 62769 0.66 0.801206
Target:  5'- cCACCAcGACGGCGaaGCCCgCgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGG-G-CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 62811 0.66 0.801206
Target:  5'- cCACCAcGACGGCGaaGCCCgCgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGG-G-CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 62853 0.67 0.736696
Target:  5'- cCACCAcGACGGCGaaGCCCacgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGGg--CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 62895 0.68 0.667892
Target:  5'- cCACCAcGACGGCGaaGCCCaCGGGGgCGa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGG-GCCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 62937 0.67 0.736696
Target:  5'- cCACCAcGACGGCGaaGCCCacgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGGg--CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 63099 0.67 0.736696
Target:  5'- cCACCAcGACGGCGaaGCCCacgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGGg--CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 63606 0.68 0.667892
Target:  5'- aUCACCAcGGCGACGcCCgCgGGAGcCAa -3'
miRNA:   3'- -AGUGGUcCUGCUGCuGG-GgCCUCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.