miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2881 3' -58.5 NC_001493.1 + 2832 0.66 0.792365
Target:  5'- -gACUuGGcgacCGAUGACCCCGG-GUCGa -3'
miRNA:   3'- agUGGuCCu---GCUGCUGGGGCCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 3019 0.7 0.59669
Target:  5'- cCGCCguggucgaacagaAGGGCG-CGAUcgaCCCGGGGUCAu -3'
miRNA:   3'- aGUGG-------------UCCUGCuGCUG---GGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 3247 0.67 0.765042
Target:  5'- gCACCGGccgUGACGAgCCCgagguGGAGUCAg -3'
miRNA:   3'- aGUGGUCcu-GCUGCUgGGG-----CCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 5616 0.7 0.587702
Target:  5'- aCACCGcuGGAUGcCGACCUCGGGGa-- -3'
miRNA:   3'- aGUGGU--CCUGCuGCUGGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 8478 0.66 0.792365
Target:  5'- uUCGaagCGGGcACGGCGcGCCaCGGAGUCAc -3'
miRNA:   3'- -AGUg--GUCC-UGCUGC-UGGgGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 9156 0.69 0.627774
Target:  5'- aCACCagguucugaaacGGGACGGCGuACCCCGuGGGaUCc -3'
miRNA:   3'- aGUGG------------UCCUGCUGC-UGGGGC-CUC-AGu -5'
2881 3' -58.5 NC_001493.1 + 9609 0.68 0.687816
Target:  5'- --gUCGGuGACGGCggguGACUCCGGGGUCGu -3'
miRNA:   3'- aguGGUC-CUGCUG----CUGGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 9783 1.08 0.00185
Target:  5'- aUCACCAGGACGACGACCCCGGAGUCAc -3'
miRNA:   3'- -AGUGGUCCUGCUGCUGGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 11146 0.69 0.617733
Target:  5'- -gACCAGGGCucGAUGACCCCcGAGgCGg -3'
miRNA:   3'- agUGGUCCUG--CUGCUGGGGcCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 12692 0.73 0.393093
Target:  5'- -gACCccGGACG-CGACCCgGGAGUCu -3'
miRNA:   3'- agUGGu-CCUGCuGCUGGGgCCUCAGu -5'
2881 3' -58.5 NC_001493.1 + 12896 0.65 0.824317
Target:  5'- cCACCagcuguugaccccgGGGACGG-GACCCCgGGAGg-- -3'
miRNA:   3'- aGUGG--------------UCCUGCUgCUGGGG-CCUCagu -5'
2881 3' -58.5 NC_001493.1 + 13065 0.68 0.667892
Target:  5'- cUC-CCGGGGuccCGuCCCCGGGGUCAa -3'
miRNA:   3'- -AGuGGUCCUgcuGCuGGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 13211 0.72 0.461836
Target:  5'- aUCACCcaGAgGGCGACCCCGGcgaacaccagggaGGUCAc -3'
miRNA:   3'- -AGUGGucCUgCUGCUGGGGCC-------------UCAGU- -5'
2881 3' -58.5 NC_001493.1 + 15517 0.69 0.657885
Target:  5'- cUCACCAcGGugcuauCGAaggUGGCCCCGGAGg-- -3'
miRNA:   3'- -AGUGGU-CCu-----GCU---GCUGGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 17782 0.7 0.557949
Target:  5'- gCGCCAcc-CGAgCGAUCCCGGGGUCGg -3'
miRNA:   3'- aGUGGUccuGCU-GCUGGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 21265 0.67 0.765042
Target:  5'- aUCGCC---GC-ACGACCCCGGGGUgAg -3'
miRNA:   3'- -AGUGGuccUGcUGCUGGGGCCUCAgU- -5'
2881 3' -58.5 NC_001493.1 + 21393 0.71 0.53835
Target:  5'- uUCACCAgGGGCGGCGGCCUgaaGGUCGg -3'
miRNA:   3'- -AGUGGU-CCUGCUGCUGGGgccUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 24224 0.68 0.717346
Target:  5'- gUCACCGaguGGuuGGCGACCCU-GAGUCc -3'
miRNA:   3'- -AGUGGU---CCugCUGCUGGGGcCUCAGu -5'
2881 3' -58.5 NC_001493.1 + 24450 0.67 0.72706
Target:  5'- aCGCCAagauggacucGGugGACGAaaCCGGGGUg- -3'
miRNA:   3'- aGUGGU----------CCugCUGCUggGGCCUCAgu -5'
2881 3' -58.5 NC_001493.1 + 26136 0.66 0.801206
Target:  5'- aUCACUGGGACGGCGcggugccgagaACCaCCGGuGa-- -3'
miRNA:   3'- -AGUGGUCCUGCUGC-----------UGG-GGCCuCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.