miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2881 3' -58.5 NC_001493.1 + 67435 0.67 0.773357
Target:  5'- aCGCCAuGGcagcucacuacucGCGGCGAUaCCCGG-GUCAu -3'
miRNA:   3'- aGUGGU-CC-------------UGCUGCUG-GGGCCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 54833 0.68 0.69475
Target:  5'- aUACCGGGuCGugGcagcgccaggcuguGCCCCGGGGa-- -3'
miRNA:   3'- aGUGGUCCuGCugC--------------UGGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 72453 0.68 0.697715
Target:  5'- -aACCccGGGCuGCGAUCCCGG-GUCAg -3'
miRNA:   3'- agUGGu-CCUGcUGCUGGGGCCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 24224 0.68 0.717346
Target:  5'- gUCACCGaguGGuuGGCGACCCU-GAGUCc -3'
miRNA:   3'- -AGUGGU---CCugCUGCUGGGGcCUCAGu -5'
2881 3' -58.5 NC_001493.1 + 63739 0.67 0.72706
Target:  5'- gUCGCCGGuGugGugGucACCgCGGuGUCGu -3'
miRNA:   3'- -AGUGGUC-CugCugC--UGGgGCCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 114335 0.67 0.72706
Target:  5'- cCGCCGGcGGCuuccuCGAUCCCGaGAGUCu -3'
miRNA:   3'- aGUGGUC-CUGcu---GCUGGGGC-CUCAGu -5'
2881 3' -58.5 NC_001493.1 + 24450 0.67 0.72706
Target:  5'- aCGCCAagauggacucGGugGACGAaaCCGGGGUg- -3'
miRNA:   3'- aGUGGU----------CCugCUGCUggGGCCUCAgu -5'
2881 3' -58.5 NC_001493.1 + 35653 0.67 0.755695
Target:  5'- cUCGCCGGGGUGuACGACCUCguGGAGa-- -3'
miRNA:   3'- -AGUGGUCCUGC-UGCUGGGG--CCUCagu -5'
2881 3' -58.5 NC_001493.1 + 21265 0.67 0.765042
Target:  5'- aUCGCC---GC-ACGACCCCGGGGUgAg -3'
miRNA:   3'- -AGUGGuccUGcUGCUGGGGCCUCAgU- -5'
2881 3' -58.5 NC_001493.1 + 125163 0.68 0.687816
Target:  5'- --gUCGGuGACGGCggguGACUCCGGGGUCGu -3'
miRNA:   3'- aguGGUC-CUGCUG----CUGGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 9609 0.68 0.687816
Target:  5'- --gUCGGuGACGGCggguGACUCCGGGGUCGu -3'
miRNA:   3'- aguGGUC-CUGCUG----CUGGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 131071 0.69 0.657885
Target:  5'- cUCACCAcGGugcuauCGAaggUGGCCCCGGAGg-- -3'
miRNA:   3'- -AGUGGU-CCu-----GCU---GCUGGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 128246 0.73 0.393093
Target:  5'- -gACCccGGACG-CGACCCgGGAGUCu -3'
miRNA:   3'- agUGGu-CCUGCuGCUGGGgCCUCAGu -5'
2881 3' -58.5 NC_001493.1 + 27281 0.7 0.557949
Target:  5'- gUCACUcac-CGGCGugCCCGGGGUCGc -3'
miRNA:   3'- -AGUGGuccuGCUGCugGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 5616 0.7 0.587702
Target:  5'- aCACCGcuGGAUGcCGACCUCGGGGa-- -3'
miRNA:   3'- aGUGGU--CCUGCuGCUGGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 121170 0.7 0.587702
Target:  5'- aCACCGcuGGAUGcCGACCUCGGGGa-- -3'
miRNA:   3'- aGUGGU--CCUGCuGCUGGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 11146 0.69 0.617733
Target:  5'- -gACCAGGGCucGAUGACCCCcGAGgCGg -3'
miRNA:   3'- agUGGUCCUG--CUGCUGGGGcCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 126701 0.69 0.617733
Target:  5'- -gACCAGGGCucGAUGACCCCcGAGgCGg -3'
miRNA:   3'- agUGGUCCUG--CUGCUGGGGcCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 46661 0.69 0.631791
Target:  5'- uUCGCCAGGAaGAUagcccgucucaccgaGGCCCUGGAGaaguUCAa -3'
miRNA:   3'- -AGUGGUCCUgCUG---------------CUGGGGCCUC----AGU- -5'
2881 3' -58.5 NC_001493.1 + 15517 0.69 0.657885
Target:  5'- cUCACCAcGGugcuauCGAaggUGGCCCCGGAGg-- -3'
miRNA:   3'- -AGUGGU-CCu-----GCU---GCUGGGGCCUCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.