miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2881 3' -58.5 NC_001493.1 + 125337 1.08 0.00185
Target:  5'- aUCACCAGGACGACGACCCCGGAGUCAc -3'
miRNA:   3'- -AGUGGUCCUGCUGCUGGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 64059 0.68 0.667892
Target:  5'- aUCACCAcGGCGACGcCCgCgGGAGcCAa -3'
miRNA:   3'- -AGUGGUcCUGCUGCuGG-GgCCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 63975 0.68 0.667892
Target:  5'- aUCACCAcGGCGACGcCCgCgGGAGcCAa -3'
miRNA:   3'- -AGUGGUcCUGCUGCuGG-GgCCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 94848 0.66 0.821807
Target:  5'- cCACCGGGACGuacccccggucgggcACGA-CCCGGuaacuGGUCc -3'
miRNA:   3'- aGUGGUCCUGC---------------UGCUgGGGCC-----UCAGu -5'
2881 3' -58.5 NC_001493.1 + 112991 0.72 0.481157
Target:  5'- uUCGCCGGGAgGAUGGgCUCGGGGa-- -3'
miRNA:   3'- -AGUGGUCCUgCUGCUgGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 21393 0.71 0.53835
Target:  5'- uUCACCAgGGGCGGCGGCCUgaaGGUCGg -3'
miRNA:   3'- -AGUGGU-CCUGCUGCUGGGgccUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 17782 0.7 0.557949
Target:  5'- gCGCCAcc-CGAgCGAUCCCGGGGUCGg -3'
miRNA:   3'- aGUGGUccuGCU-GCUGGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 90134 0.7 0.587702
Target:  5'- -gGCCGGucCGugcGCGACCCCGGAGg-- -3'
miRNA:   3'- agUGGUCcuGC---UGCUGGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 3019 0.7 0.59669
Target:  5'- cCGCCguggucgaacagaAGGGCG-CGAUcgaCCCGGGGUCAu -3'
miRNA:   3'- aGUGG-------------UCCUGCuGCUG---GGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 128619 0.68 0.667892
Target:  5'- cUC-CCGGGGuccCGuCCCCGGGGUCAa -3'
miRNA:   3'- -AGuGGUCCUgcuGCuGGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 124710 0.69 0.627774
Target:  5'- aCACCagguucugaaacGGGACGGCGuACCCCGuGGGaUCc -3'
miRNA:   3'- aGUGG------------UCCUGCUGC-UGGGGC-CUC-AGu -5'
2881 3' -58.5 NC_001493.1 + 118573 0.7 0.59669
Target:  5'- cCGCCguggucgaacagaAGGGCG-CGAUcgaCCCGGGGUCAu -3'
miRNA:   3'- aGUGG-------------UCCUGCuGCUG---GGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 9783 1.08 0.00185
Target:  5'- aUCACCAGGACGACGACCCCGGAGUCAc -3'
miRNA:   3'- -AGUGGUCCUGCUGCUGGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 9156 0.69 0.627774
Target:  5'- aCACCagguucugaaacGGGACGGCGuACCCCGuGGGaUCc -3'
miRNA:   3'- aGUGG------------UCCUGCUGC-UGGGGC-CUC-AGu -5'
2881 3' -58.5 NC_001493.1 + 128765 0.72 0.461836
Target:  5'- aUCACCcaGAgGGCGACCCCGGcgaacaccagggaGGUCAc -3'
miRNA:   3'- -AGUGGucCUgCUGCUGGGGCC-------------UCAGU- -5'
2881 3' -58.5 NC_001493.1 + 61716 0.7 0.587702
Target:  5'- -aGCCAGaGAUGGCGcGCCCCGuGAG-CAa -3'
miRNA:   3'- agUGGUC-CUGCUGC-UGGGGC-CUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 90620 0.69 0.637818
Target:  5'- cCACCAuGGACGGUG-CgCUCGGGGUCAu -3'
miRNA:   3'- aGUGGU-CCUGCUGCuG-GGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 64017 0.68 0.667892
Target:  5'- aUCACCAcGGCGACGcCCgCgGGAGcCAa -3'
miRNA:   3'- -AGUGGUcCUGCUGCuGG-GgCCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 13211 0.72 0.461836
Target:  5'- aUCACCcaGAgGGCGACCCCGGcgaacaccagggaGGUCAc -3'
miRNA:   3'- -AGUGGucCUgCUGCUGGGGCC-------------UCAGU- -5'
2881 3' -58.5 NC_001493.1 + 133336 0.7 0.557949
Target:  5'- gCGCCAcc-CGAgCGAUCCCGGGGUCGg -3'
miRNA:   3'- aGUGGUccuGCU-GCUGGGGCCUCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.