Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 133336 | 0.7 | 0.557949 |
Target: 5'- gCGCCAcc-CGAgCGAUCCCGGGGUCGg -3' miRNA: 3'- aGUGGUccuGCU-GCUGGGGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 131071 | 0.69 | 0.657885 |
Target: 5'- cUCACCAcGGugcuauCGAaggUGGCCCCGGAGg-- -3' miRNA: 3'- -AGUGGU-CCu-----GCU---GCUGGGGCCUCagu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 128765 | 0.72 | 0.461836 |
Target: 5'- aUCACCcaGAgGGCGACCCCGGcgaacaccagggaGGUCAc -3' miRNA: 3'- -AGUGGucCUgCUGCUGGGGCC-------------UCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 128619 | 0.68 | 0.667892 |
Target: 5'- cUC-CCGGGGuccCGuCCCCGGGGUCAa -3' miRNA: 3'- -AGuGGUCCUgcuGCuGGGGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 128450 | 0.65 | 0.824317 |
Target: 5'- cCACCagcuguugaccccgGGGACGG-GACCCCgGGAGg-- -3' miRNA: 3'- aGUGG--------------UCCUGCUgCUGGGG-CCUCagu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 128246 | 0.73 | 0.393093 |
Target: 5'- -gACCccGGACG-CGACCCgGGAGUCu -3' miRNA: 3'- agUGGu-CCUGCuGCUGGGgCCUCAGu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 126701 | 0.69 | 0.617733 |
Target: 5'- -gACCAGGGCucGAUGACCCCcGAGgCGg -3' miRNA: 3'- agUGGUCCUG--CUGCUGGGGcCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 125337 | 1.08 | 0.00185 |
Target: 5'- aUCACCAGGACGACGACCCCGGAGUCAc -3' miRNA: 3'- -AGUGGUCCUGCUGCUGGGGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 125163 | 0.68 | 0.687816 |
Target: 5'- --gUCGGuGACGGCggguGACUCCGGGGUCGu -3' miRNA: 3'- aguGGUC-CUGCUG----CUGGGGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 124710 | 0.69 | 0.627774 |
Target: 5'- aCACCagguucugaaacGGGACGGCGuACCCCGuGGGaUCc -3' miRNA: 3'- aGUGG------------UCCUGCUGC-UGGGGC-CUC-AGu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 124032 | 0.66 | 0.792365 |
Target: 5'- uUCGaagCGGGcACGGCGcGCCaCGGAGUCAc -3' miRNA: 3'- -AGUg--GUCC-UGCUGC-UGGgGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 121170 | 0.7 | 0.587702 |
Target: 5'- aCACCGcuGGAUGcCGACCUCGGGGa-- -3' miRNA: 3'- aGUGGU--CCUGCuGCUGGGGCCUCagu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 118801 | 0.67 | 0.765042 |
Target: 5'- gCACCGGccgUGACGAgCCCgagguGGAGUCAg -3' miRNA: 3'- aGUGGUCcu-GCUGCUgGGG-----CCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 118573 | 0.7 | 0.59669 |
Target: 5'- cCGCCguggucgaacagaAGGGCG-CGAUcgaCCCGGGGUCAu -3' miRNA: 3'- aGUGG-------------UCCUGCuGCUG---GGGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 118386 | 0.66 | 0.792365 |
Target: 5'- -gACUuGGcgacCGAUGACCCCGG-GUCGa -3' miRNA: 3'- agUGGuCCu---GCUGCUGGGGCCuCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 114335 | 0.67 | 0.72706 |
Target: 5'- cCGCCGGcGGCuuccuCGAUCCCGaGAGUCu -3' miRNA: 3'- aGUGGUC-CUGcu---GCUGGGGC-CUCAGu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 113878 | 0.66 | 0.783386 |
Target: 5'- uUCAUCGGGcgguaGugGACCCCGaGcGUCu -3' miRNA: 3'- -AGUGGUCCug---CugCUGGGGC-CuCAGu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 112991 | 0.72 | 0.481157 |
Target: 5'- uUCGCCGGGAgGAUGGgCUCGGGGa-- -3' miRNA: 3'- -AGUGGUCCUgCUGCUgGGGCCUCagu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 112455 | 0.68 | 0.667892 |
Target: 5'- uUC-CCGGGAauuCGACCCCGGGuuucgaaucccGUCAg -3' miRNA: 3'- -AGuGGUCCUgcuGCUGGGGCCU-----------CAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 103718 | 0.67 | 0.774275 |
Target: 5'- cCAgCAGGACc-UGACCUCGGAG-CAg -3' miRNA: 3'- aGUgGUCCUGcuGCUGGGGCCUCaGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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