miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2881 3' -58.5 NC_001493.1 + 100294 0.66 0.783386
Target:  5'- gUUAUUucuGGAUuggagcacgGGCGGCCCCGGGGUUg -3'
miRNA:   3'- -AGUGGu--CCUG---------CUGCUGGGGCCUCAGu -5'
2881 3' -58.5 NC_001493.1 + 103718 0.67 0.774275
Target:  5'- cCAgCAGGACc-UGACCUCGGAG-CAg -3'
miRNA:   3'- aGUgGUCCUGcuGCUGGGGCCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 67435 0.67 0.773357
Target:  5'- aCGCCAuGGcagcucacuacucGCGGCGAUaCCCGG-GUCAu -3'
miRNA:   3'- aGUGGU-CC-------------UGCUGCUG-GGGCCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 118801 0.67 0.765042
Target:  5'- gCACCGGccgUGACGAgCCCgagguGGAGUCAg -3'
miRNA:   3'- aGUGGUCcu-GCUGCUgGGG-----CCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 43918 0.67 0.765042
Target:  5'- cCACCA--ACGaACGGCCaucgCGGAGUCAu -3'
miRNA:   3'- aGUGGUccUGC-UGCUGGg---GCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 3247 0.67 0.765042
Target:  5'- gCACCGGccgUGACGAgCCCgagguGGAGUCAg -3'
miRNA:   3'- aGUGGUCcu-GCUGCUgGGG-----CCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 21265 0.67 0.765042
Target:  5'- aUCGCC---GC-ACGACCCCGGGGUgAg -3'
miRNA:   3'- -AGUGGuccUGcUGCUGGGGCCUCAgU- -5'
2881 3' -58.5 NC_001493.1 + 70679 0.67 0.755695
Target:  5'- -gGCCcGGGCGGgGAUCCCGGcGGaUCAc -3'
miRNA:   3'- agUGGuCCUGCUgCUGGGGCC-UC-AGU- -5'
2881 3' -58.5 NC_001493.1 + 35653 0.67 0.755695
Target:  5'- cUCGCCGGGGUGuACGACCUCguGGAGa-- -3'
miRNA:   3'- -AGUGGUCCUGC-UGCUGGGG--CCUCagu -5'
2881 3' -58.5 NC_001493.1 + 63099 0.67 0.736696
Target:  5'- cCACCAcGACGGCGaaGCCCacgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGGg--CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 62853 0.67 0.736696
Target:  5'- cCACCAcGACGGCGaaGCCCacgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGGg--CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 62937 0.67 0.736696
Target:  5'- cCACCAcGACGGCGaaGCCCacgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGGg--CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 24450 0.67 0.72706
Target:  5'- aCGCCAagauggacucGGugGACGAaaCCGGGGUg- -3'
miRNA:   3'- aGUGGU----------CCugCUGCUggGGCCUCAgu -5'
2881 3' -58.5 NC_001493.1 + 63739 0.67 0.72706
Target:  5'- gUCGCCGGuGugGugGucACCgCGGuGUCGu -3'
miRNA:   3'- -AGUGGUC-CugCugC--UGGgGCCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 114335 0.67 0.72706
Target:  5'- cCGCCGGcGGCuuccuCGAUCCCGaGAGUCu -3'
miRNA:   3'- aGUGGUC-CUGcu---GCUGGGGC-CUCAGu -5'
2881 3' -58.5 NC_001493.1 + 24224 0.68 0.717346
Target:  5'- gUCACCGaguGGuuGGCGACCCU-GAGUCc -3'
miRNA:   3'- -AGUGGU---CCugCUGCUGGGGcCUCAGu -5'
2881 3' -58.5 NC_001493.1 + 72453 0.68 0.697715
Target:  5'- -aACCccGGGCuGCGAUCCCGG-GUCAg -3'
miRNA:   3'- agUGGu-CCUGcUGCUGGGGCCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 54833 0.68 0.69475
Target:  5'- aUACCGGGuCGugGcagcgccaggcuguGCCCCGGGGa-- -3'
miRNA:   3'- aGUGGUCCuGCugC--------------UGGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 9609 0.68 0.687816
Target:  5'- --gUCGGuGACGGCggguGACUCCGGGGUCGu -3'
miRNA:   3'- aguGGUC-CUGCUG----CUGGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 125163 0.68 0.687816
Target:  5'- --gUCGGuGACGGCggguGACUCCGGGGUCGu -3'
miRNA:   3'- aguGGUC-CUGCUG----CUGGGGCCUCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.