miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28812 3' -52.8 NC_006146.1 + 70607 0.67 0.96164
Target:  5'- aCUCUGaucgCGGUgcaGGCcuGCCAGcCCCCg -3'
miRNA:   3'- -GAGAUgua-GUCA---CCGu-UGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 75961 0.71 0.826589
Target:  5'- cCUCUACcgCA---GCGGCCAcGUCCCCu -3'
miRNA:   3'- -GAGAUGuaGUcacCGUUGGU-CAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 85359 0.67 0.96506
Target:  5'- uCUCUAa---GGUGGUGGCCAGUUcgUCCa -3'
miRNA:   3'- -GAGAUguagUCACCGUUGGUCAG--GGG- -5'
28812 3' -52.8 NC_006146.1 + 97452 0.68 0.93624
Target:  5'- aUCUGC----GUGGCcACCAacGUCCCCg -3'
miRNA:   3'- gAGAUGuaguCACCGuUGGU--CAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 99086 1.11 0.004522
Target:  5'- gCUCUACAUCAGUGGCAACCAGUCCCCc -3'
miRNA:   3'- -GAGAUGUAGUCACCGUUGGUCAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 100785 0.66 0.976603
Target:  5'- ---aAgAUCAGUGGCAcgccuuagcaaACgGGUUCCCu -3'
miRNA:   3'- gagaUgUAGUCACCGU-----------UGgUCAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 101622 0.67 0.961641
Target:  5'- uCUUUACG-CGGUGGCAacgGCCGccguucGUCCaCCu -3'
miRNA:   3'- -GAGAUGUaGUCACCGU---UGGU------CAGG-GG- -5'
28812 3' -52.8 NC_006146.1 + 103240 0.7 0.888764
Target:  5'- ---aACuggCGGuUGGCGGCCGcGUCCCCg -3'
miRNA:   3'- gagaUGua-GUC-ACCGUUGGU-CAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 103501 0.69 0.925838
Target:  5'- gUCUuuugcuCGUCAGUGGCcuCCuGUaggCCCCg -3'
miRNA:   3'- gAGAu-----GUAGUCACCGuuGGuCA---GGGG- -5'
28812 3' -52.8 NC_006146.1 + 109052 0.67 0.96826
Target:  5'- cCUCUGCccCGGgagucccGGC-ACCAG-CCCCa -3'
miRNA:   3'- -GAGAUGuaGUCa------CCGuUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 110409 0.66 0.983212
Target:  5'- cCUCgcCGUCGG-GGgAGCUGGcCCCCc -3'
miRNA:   3'- -GAGauGUAGUCaCCgUUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 115399 0.68 0.945662
Target:  5'- gCUCgcgUGCAggaggCAGcUGGCGGCCGGgCCUCg -3'
miRNA:   3'- -GAG---AUGUa----GUC-ACCGUUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 116093 0.74 0.691705
Target:  5'- --gUGCAU-GGUGGCGGCCacccgagGGUCCCCg -3'
miRNA:   3'- gagAUGUAgUCACCGUUGG-------UCAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 118084 0.7 0.888764
Target:  5'- cCUCcGCAUCcugGGCAcggccucgugcaACCAGUCCCa -3'
miRNA:   3'- -GAGaUGUAGucaCCGU------------UGGUCAGGGg -5'
28812 3' -52.8 NC_006146.1 + 120914 0.69 0.914451
Target:  5'- uUCgUGCA-CAauGUGGCGGCCGGUCCa- -3'
miRNA:   3'- gAG-AUGUaGU--CACCGUUGGUCAGGgg -5'
28812 3' -52.8 NC_006146.1 + 121645 0.67 0.974025
Target:  5'- cCUCUACAg-GG-GGCuACCGG-CCCUg -3'
miRNA:   3'- -GAGAUGUagUCaCCGuUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 123501 0.67 0.961641
Target:  5'- ----uCAUCAGcaUGGCGGCCAGacgCUCCa -3'
miRNA:   3'- gagauGUAGUC--ACCGUUGGUCa--GGGG- -5'
28812 3' -52.8 NC_006146.1 + 124839 0.66 0.983212
Target:  5'- -cCUGCAgCAGcuaUGGCAcucGCUGcGUCCCCu -3'
miRNA:   3'- gaGAUGUaGUC---ACCGU---UGGU-CAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 129507 0.69 0.931162
Target:  5'- gUCUACGUCugcggguucGUGgaGCGGCCGGaugCCCCa -3'
miRNA:   3'- gAGAUGUAGu--------CAC--CGUUGGUCa--GGGG- -5'
28812 3' -52.8 NC_006146.1 + 139204 0.73 0.743067
Target:  5'- -------gCGGUGGCAGCCgcGGUCCCCc -3'
miRNA:   3'- gagauguaGUCACCGUUGG--UCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.