Results 1 - 20 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 199 | 0.69 | 0.925837 |
Target: 5'- uCUCUACGcgcCGGUGcccccGCGA-CGGUCCCCg -3' miRNA: 3'- -GAGAUGUa--GUCAC-----CGUUgGUCAGGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 1227 | 0.7 | 0.888764 |
Target: 5'- gCUCUugGcCGGUGGCAGCau-UCUCCa -3' miRNA: 3'- -GAGAugUaGUCACCGUUGgucAGGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 1477 | 0.66 | 0.984527 |
Target: 5'- gUCUGucUCAGUggccuccugaccauGGCAGCCGG-CCUCg -3' miRNA: 3'- gAGAUguAGUCA--------------CCGUUGGUCaGGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 12036 | 0.66 | 0.976603 |
Target: 5'- -gCUACGUggCGGgugcGGCcACCAG-CCCCa -3' miRNA: 3'- gaGAUGUA--GUCa---CCGuUGGUCaGGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 13246 | 0.72 | 0.800072 |
Target: 5'- uUCUACAUCAGccUGGUccaggGGCUGGUgCCCa -3' miRNA: 3'- gAGAUGUAGUC--ACCG-----UUGGUCAgGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 16206 | 0.66 | 0.978293 |
Target: 5'- -gCUGCAUCuG-GGCGcagaccacccagcaGCCAGcgCCCCc -3' miRNA: 3'- gaGAUGUAGuCaCCGU--------------UGGUCa-GGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 24358 | 0.69 | 0.925837 |
Target: 5'- -gCUACAagUAGUGGCGcaggGCCAG-CUCCa -3' miRNA: 3'- gaGAUGUa-GUCACCGU----UGGUCaGGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 25689 | 0.71 | 0.835075 |
Target: 5'- uUCUACGUCuacccucaggAGUGGaAGCCGGgccagCCCCu -3' miRNA: 3'- gAGAUGUAG----------UCACCgUUGGUCa----GGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 35144 | 0.66 | 0.985066 |
Target: 5'- -cCUGCcUCAccGUGGCAcACUAaUCCCCu -3' miRNA: 3'- gaGAUGuAGU--CACCGU-UGGUcAGGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 43136 | 0.67 | 0.974025 |
Target: 5'- -gCUGCAgCAG-GGCAAUC--UCCCCa -3' miRNA: 3'- gaGAUGUaGUCaCCGUUGGucAGGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 44344 | 0.7 | 0.889452 |
Target: 5'- uUCUGCAcaGGUGGCugauggggacgagguGCCAGaCCCCc -3' miRNA: 3'- gAGAUGUagUCACCGu--------------UGGUCaGGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 45407 | 0.66 | 0.976603 |
Target: 5'- ---cACGUCGGUGG--GCCAGcgcgaggCCCCg -3' miRNA: 3'- gagaUGUAGUCACCguUGGUCa------GGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 51010 | 0.71 | 0.835075 |
Target: 5'- cCUCUACGUCAGacaGGUAgcguacgagGCCGGaUCCCa -3' miRNA: 3'- -GAGAUGUAGUCa--CCGU---------UGGUC-AGGGg -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 51806 | 0.68 | 0.93624 |
Target: 5'- -aCUugAUCAGgagGGCGGCC--UCCUCg -3' miRNA: 3'- gaGAugUAGUCa--CCGUUGGucAGGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 56574 | 0.66 | 0.976603 |
Target: 5'- -cCUcCGUCAGgGGCGGCCGGgcgccgagCCCg -3' miRNA: 3'- gaGAuGUAGUCaCCGUUGGUCa-------GGGg -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 56616 | 0.7 | 0.87451 |
Target: 5'- cCUCgccgGCGUCcauAGUGGCAGCCaugaaGGUCCa- -3' miRNA: 3'- -GAGa---UGUAG---UCACCGUUGG-----UCAGGgg -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 57371 | 0.72 | 0.817045 |
Target: 5'- -gCUGCggCGGUGGC-GCCGGUgggcuggCCCCg -3' miRNA: 3'- gaGAUGuaGUCACCGuUGGUCA-------GGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 58531 | 0.67 | 0.974025 |
Target: 5'- uCUCUGCAagcggccggUCAgcGUGGCGGCCuacauGgagCCCUg -3' miRNA: 3'- -GAGAUGU---------AGU--CACCGUUGGu----Ca--GGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 60345 | 0.71 | 0.866286 |
Target: 5'- gUCUACucugCGGUgGGCAGCCucuuugaacaggaGGUCUCCg -3' miRNA: 3'- gAGAUGua--GUCA-CCGUUGG-------------UCAGGGG- -5' |
|||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 68354 | 0.67 | 0.961641 |
Target: 5'- cCUCcGCcgugucaguGUUGGUGGCAACCAGggCCUUg -3' miRNA: 3'- -GAGaUG---------UAGUCACCGUUGGUCa-GGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home