Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 146399 | 0.72 | 0.817921 |
Target: 5'- -cCUACGUgCAGUGGCuu---GUCCCCg -3' miRNA: 3'- gaGAUGUA-GUCACCGuugguCAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 161741 | 0.68 | 0.95001 |
Target: 5'- ---gGCA-CGGUGGgAGCCcgccGUCCCCg -3' miRNA: 3'- gagaUGUaGUCACCgUUGGu---CAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 101622 | 0.67 | 0.961641 |
Target: 5'- uCUUUACG-CGGUGGCAacgGCCGccguucGUCCaCCu -3' miRNA: 3'- -GAGAUGUaGUCACCGU---UGGU------CAGG-GG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 35144 | 0.66 | 0.985066 |
Target: 5'- -cCUGCcUCAccGUGGCAcACUAaUCCCCu -3' miRNA: 3'- gaGAUGuAGU--CACCGU-UGGUcAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 1227 | 0.7 | 0.888764 |
Target: 5'- gCUCUugGcCGGUGGCAGCau-UCUCCa -3' miRNA: 3'- -GAGAugUaGUCACCGUUGgucAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 44344 | 0.7 | 0.889452 |
Target: 5'- uUCUGCAcaGGUGGCugauggggacgagguGCCAGaCCCCc -3' miRNA: 3'- gAGAUGUagUCACCGu--------------UGGUCaGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 129507 | 0.69 | 0.931162 |
Target: 5'- gUCUACGUCugcggguucGUGgaGCGGCCGGaugCCCCa -3' miRNA: 3'- gAGAUGUAGu--------CAC--CGUUGGUCa--GGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 116093 | 0.74 | 0.691705 |
Target: 5'- --gUGCAU-GGUGGCGGCCacccgagGGUCCCCg -3' miRNA: 3'- gagAUGUAgUCACCGUUGG-------UCAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 139204 | 0.73 | 0.743067 |
Target: 5'- -------gCGGUGGCAGCCgcGGUCCCCc -3' miRNA: 3'- gagauguaGUCACCGUUGG--UCAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 147497 | 0.68 | 0.941073 |
Target: 5'- cCUCcgGCAggucCAGcggaaGGCAguuagagaacGCCAGUCCCCu -3' miRNA: 3'- -GAGa-UGUa---GUCa----CCGU----------UGGUCAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 169098 | 0.68 | 0.93624 |
Target: 5'- gUCUGC-UCcc--GCGGCCAGUCCCUg -3' miRNA: 3'- gAGAUGuAGucacCGUUGGUCAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 168166 | 0.68 | 0.93624 |
Target: 5'- gUCUGC-UCcc--GCGGCCAGUCCCUg -3' miRNA: 3'- gAGAUGuAGucacCGUUGGUCAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 51010 | 0.71 | 0.835075 |
Target: 5'- cCUCUACGUCAGacaGGUAgcguacgagGCCGGaUCCCa -3' miRNA: 3'- -GAGAUGUAGUCa--CCGU---------UGGUC-AGGGg -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 170030 | 0.68 | 0.93624 |
Target: 5'- gUCUGC-UCcc--GCGGCCAGUCCCUg -3' miRNA: 3'- gAGAUGuAGucacCGUUGGUCAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 56616 | 0.7 | 0.87451 |
Target: 5'- cCUCgccgGCGUCcauAGUGGCAGCCaugaaGGUCCa- -3' miRNA: 3'- -GAGa---UGUAG---UCACCGUUGG-----UCAGGgg -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 167234 | 0.68 | 0.93624 |
Target: 5'- gUCUGC-UCcc--GCGGCCAGUCCCUg -3' miRNA: 3'- gAGAUGuAGucacCGUUGGUCAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 97452 | 0.68 | 0.93624 |
Target: 5'- aUCUGC----GUGGCcACCAacGUCCCCg -3' miRNA: 3'- gAGAUGuaguCACCGuUGGU--CAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 123501 | 0.67 | 0.961641 |
Target: 5'- ----uCAUCAGcaUGGCGGCCAGacgCUCCa -3' miRNA: 3'- gagauGUAGUC--ACCGUUGGUCa--GGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 103240 | 0.7 | 0.888764 |
Target: 5'- ---aACuggCGGuUGGCGGCCGcGUCCCCg -3' miRNA: 3'- gagaUGua-GUC-ACCGUUGGU-CAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 103501 | 0.69 | 0.925838 |
Target: 5'- gUCUuuugcuCGUCAGUGGCcuCCuGUaggCCCCg -3' miRNA: 3'- gAGAu-----GUAGUCACCGuuGGuCA---GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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