miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28812 3' -52.8 NC_006146.1 + 139204 0.73 0.743067
Target:  5'- -------gCGGUGGCAGCCgcGGUCCCCc -3'
miRNA:   3'- gagauguaGUCACCGUUGG--UCAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 43136 0.67 0.974025
Target:  5'- -gCUGCAgCAG-GGCAAUC--UCCCCa -3'
miRNA:   3'- gaGAUGUaGUCaCCGUUGGucAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 58531 0.67 0.974025
Target:  5'- uCUCUGCAagcggccggUCAgcGUGGCGGCCuacauGgagCCCUg -3'
miRNA:   3'- -GAGAUGU---------AGU--CACCGUUGGu----Ca--GGGG- -5'
28812 3' -52.8 NC_006146.1 + 162960 0.66 0.985066
Target:  5'- ---gGCAUCGGaguUGGCGggcGCCccuuucccgGGUCCCCc -3'
miRNA:   3'- gagaUGUAGUC---ACCGU---UGG---------UCAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 161741 0.68 0.95001
Target:  5'- ---gGCA-CGGUGGgAGCCcgccGUCCCCg -3'
miRNA:   3'- gagaUGUaGUCACCgUUGGu---CAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 45407 0.66 0.976603
Target:  5'- ---cACGUCGGUGG--GCCAGcgcgaggCCCCg -3'
miRNA:   3'- gagaUGUAGUCACCguUGGUCa------GGGG- -5'
28812 3' -52.8 NC_006146.1 + 110409 0.66 0.983212
Target:  5'- cCUCgcCGUCGG-GGgAGCUGGcCCCCc -3'
miRNA:   3'- -GAGauGUAGUCaCCgUUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 35144 0.66 0.985066
Target:  5'- -cCUGCcUCAccGUGGCAcACUAaUCCCCu -3'
miRNA:   3'- gaGAUGuAGU--CACCGU-UGGUcAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 109052 0.67 0.96826
Target:  5'- cCUCUGCccCGGgagucccGGC-ACCAG-CCCCa -3'
miRNA:   3'- -GAGAUGuaGUCa------CCGuUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 116093 0.74 0.691705
Target:  5'- --gUGCAU-GGUGGCGGCCacccgagGGUCCCCg -3'
miRNA:   3'- gagAUGUAgUCACCGUUGG-------UCAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 1477 0.66 0.984527
Target:  5'- gUCUGucUCAGUggccuccugaccauGGCAGCCGG-CCUCg -3'
miRNA:   3'- gAGAUguAGUCA--------------CCGUUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 140687 0.66 0.983212
Target:  5'- uCUCUACcaUAGUGGgGGCUGGUUCUg -3'
miRNA:   3'- -GAGAUGuaGUCACCgUUGGUCAGGGg -5'
28812 3' -52.8 NC_006146.1 + 56574 0.66 0.976603
Target:  5'- -cCUcCGUCAGgGGCGGCCGGgcgccgagCCCg -3'
miRNA:   3'- gaGAuGUAGUCaCCGUUGGUCa-------GGGg -5'
28812 3' -52.8 NC_006146.1 + 115399 0.68 0.945662
Target:  5'- gCUCgcgUGCAggaggCAGcUGGCGGCCGGgCCUCg -3'
miRNA:   3'- -GAG---AUGUa----GUC-ACCGUUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 75961 0.71 0.826589
Target:  5'- cCUCUACcgCA---GCGGCCAcGUCCCCu -3'
miRNA:   3'- -GAGAUGuaGUcacCGUUGGU-CAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 70607 0.67 0.96164
Target:  5'- aCUCUGaucgCGGUgcaGGCcuGCCAGcCCCCg -3'
miRNA:   3'- -GAGAUgua-GUCA---CCGu-UGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 25689 0.71 0.835075
Target:  5'- uUCUACGUCuacccucaggAGUGGaAGCCGGgccagCCCCu -3'
miRNA:   3'- gAGAUGUAG----------UCACCgUUGGUCa----GGGG- -5'
28812 3' -52.8 NC_006146.1 + 60345 0.71 0.866286
Target:  5'- gUCUACucugCGGUgGGCAGCCucuuugaacaggaGGUCUCCg -3'
miRNA:   3'- gAGAUGua--GUCA-CCGUUGG-------------UCAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 12036 0.66 0.976603
Target:  5'- -gCUACGUggCGGgugcGGCcACCAG-CCCCa -3'
miRNA:   3'- gaGAUGUA--GUCa---CCGuUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 120914 0.69 0.914451
Target:  5'- uUCgUGCA-CAauGUGGCGGCCGGUCCa- -3'
miRNA:   3'- gAG-AUGUaGU--CACCGUUGGUCAGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.