miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2882 5' -56.2 NC_001493.1 + 12970 0.66 0.902435
Target:  5'- gGGGC-CGgaCGGGUCCGgucacCACGUGGAg-- -3'
miRNA:   3'- -CCUGcGC--GCCCAGGC-----GUGCAUCUaug -5'
2882 5' -56.2 NC_001493.1 + 47915 0.66 0.902435
Target:  5'- cGGACcCGCGGGUCUGgAuCGUcugGGGUuguACa -3'
miRNA:   3'- -CCUGcGCGCCCAGGCgU-GCA---UCUA---UG- -5'
2882 5' -56.2 NC_001493.1 + 48063 0.66 0.902435
Target:  5'- aGACcCGCGGGUCCGacCGCG-AGcuccAUGCa -3'
miRNA:   3'- cCUGcGCGCCCAGGC--GUGCaUC----UAUG- -5'
2882 5' -56.2 NC_001493.1 + 128524 0.66 0.902435
Target:  5'- gGGGC-CGgaCGGGUCCGgucacCACGUGGAg-- -3'
miRNA:   3'- -CCUGcGC--GCCCAGGC-----GUGCAUCUaug -5'
2882 5' -56.2 NC_001493.1 + 40836 0.66 0.882522
Target:  5'- uGACGUGgaugaaaaacccCGGGUCCGagcCGUGGAcGCg -3'
miRNA:   3'- cCUGCGC------------GCCCAGGCgu-GCAUCUaUG- -5'
2882 5' -56.2 NC_001493.1 + 101596 0.66 0.882522
Target:  5'- aGGACGCGUaGGGUCUGUgacauCGUcuugAGAUcACc -3'
miRNA:   3'- -CCUGCGCG-CCCAGGCGu----GCA----UCUA-UG- -5'
2882 5' -56.2 NC_001493.1 + 17070 0.67 0.868137
Target:  5'- -cACGCGCGuGGcUCCGUGCGUGcGUGu -3'
miRNA:   3'- ccUGCGCGC-CC-AGGCGUGCAUcUAUg -5'
2882 5' -56.2 NC_001493.1 + 89209 0.67 0.868137
Target:  5'- uGGA-GCGCGGcGUCCuccccauguacGCGCGUGGugACu -3'
miRNA:   3'- -CCUgCGCGCC-CAGG-----------CGUGCAUCuaUG- -5'
2882 5' -56.2 NC_001493.1 + 132624 0.67 0.868137
Target:  5'- -cACGCGCGuGGcUCCGUGCGUGcGUGu -3'
miRNA:   3'- ccUGCGCGC-CC-AGGCGUGCAUcUAUg -5'
2882 5' -56.2 NC_001493.1 + 84713 0.67 0.860626
Target:  5'- uGGGCaG-GCGGGUCUggguggaaGCACuugggGUAGAUGCg -3'
miRNA:   3'- -CCUG-CgCGCCCAGG--------CGUG-----CAUCUAUG- -5'
2882 5' -56.2 NC_001493.1 + 3809 0.67 0.858333
Target:  5'- uGAUGUGCGGGUCCauccuccuccccggGCAUGacgAGAgcggACg -3'
miRNA:   3'- cCUGCGCGCCCAGG--------------CGUGCa--UCUa---UG- -5'
2882 5' -56.2 NC_001493.1 + 119363 0.67 0.858333
Target:  5'- uGAUGUGCGGGUCCauccuccuccccggGCAUGacgAGAgcggACg -3'
miRNA:   3'- cCUGCGCGCCCAGG--------------CGUGCa--UCUa---UG- -5'
2882 5' -56.2 NC_001493.1 + 108774 0.67 0.844996
Target:  5'- cGGACagcgGCGCGGcUCCGauCACGggaggAGGUGCc -3'
miRNA:   3'- -CCUG----CGCGCCcAGGC--GUGCa----UCUAUG- -5'
2882 5' -56.2 NC_001493.1 + 128396 0.67 0.83689
Target:  5'- cGGGuCGCGUccgGGGUCgGgGCGcucgGGAUACu -3'
miRNA:   3'- -CCU-GCGCG---CCCAGgCgUGCa---UCUAUG- -5'
2882 5' -56.2 NC_001493.1 + 12842 0.67 0.83689
Target:  5'- cGGGuCGCGUccgGGGUCgGgGCGcucgGGAUACu -3'
miRNA:   3'- -CCU-GCGCG---CCCAGgCgUGCa---UCUAUG- -5'
2882 5' -56.2 NC_001493.1 + 46638 0.67 0.828599
Target:  5'- aGGACGCuuucgacaccaGCGGGUUCGcCAgGaAGAUAg -3'
miRNA:   3'- -CCUGCG-----------CGCCCAGGC-GUgCaUCUAUg -5'
2882 5' -56.2 NC_001493.1 + 93309 0.68 0.82013
Target:  5'- uGGAcCGCGaugguuCGGGUgaCCGCGCGgaccGGUGCg -3'
miRNA:   3'- -CCU-GCGC------GCCCA--GGCGUGCau--CUAUG- -5'
2882 5' -56.2 NC_001493.1 + 114061 0.68 0.82013
Target:  5'- aGAUGCGCGGGgaCUGC-CGUcGGGUAUu -3'
miRNA:   3'- cCUGCGCGCCCa-GGCGuGCA-UCUAUG- -5'
2882 5' -56.2 NC_001493.1 + 47939 0.68 0.802692
Target:  5'- cGGAgagccCGUGCcccgugaaccucGuGGUCCGCACGcaUAGGUACg -3'
miRNA:   3'- -CCU-----GCGCG------------C-CCAGGCGUGC--AUCUAUG- -5'
2882 5' -56.2 NC_001493.1 + 125263 0.69 0.727509
Target:  5'- -uACGUGCGGacCCGCGCGUccaucgaggAGAUGCg -3'
miRNA:   3'- ccUGCGCGCCcaGGCGUGCA---------UCUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.