miRNA display CGI


Results 41 - 60 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 3' -57.4 NC_006146.1 + 2344 0.66 0.885002
Target:  5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3'
miRNA:   3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 3276 0.66 0.885002
Target:  5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3'
miRNA:   3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 18333 0.66 0.885002
Target:  5'- uCGGGCUUCAu-CUCCUUCuuuaaaaaCCCCUu -3'
miRNA:   3'- -GUCCGGAGUuuGAGGAGGuag-----GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 116463 0.66 0.885002
Target:  5'- gAGGUCUCGGGCguaaUCUCCGagaCCCUCu -3'
miRNA:   3'- gUCCGGAGUUUGa---GGAGGUag-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 120711 0.66 0.890376
Target:  5'- cCGGGCCUaccCGAGC-CCgCCGcaagugcaaacgCCCCCCu -3'
miRNA:   3'- -GUCCGGA---GUUUGaGGaGGUa-----------GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 14370 0.66 0.870964
Target:  5'- uCGGGUCcCGGGaucucgCCUCCcgCUCCCCu -3'
miRNA:   3'- -GUCCGGaGUUUga----GGAGGuaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 156643 0.66 0.870964
Target:  5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3'
miRNA:   3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 74434 0.66 0.856098
Target:  5'- uGGGCCagGAugUCCuuguacaugUCCcUgCCCCCa -3'
miRNA:   3'- gUCCGGagUUugAGG---------AGGuAgGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 88827 0.66 0.856098
Target:  5'- uGGGCCUgAGGCUcCCUgUAUCCCa-- -3'
miRNA:   3'- gUCCGGAgUUUGA-GGAgGUAGGGggg -5'
28823 3' -57.4 NC_006146.1 + 125817 0.66 0.856098
Target:  5'- -uGGCCggc-AC-CCUCCcUCUCCCCa -3'
miRNA:   3'- guCCGGaguuUGaGGAGGuAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 168988 0.66 0.856098
Target:  5'- gUAGaGCCUUu-GCUCCUgUAcguUCCCCUCa -3'
miRNA:   3'- -GUC-CGGAGuuUGAGGAgGU---AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 125121 0.66 0.856098
Target:  5'- -cGGCCgUCcccuGACUCuCUUCGUCUCCUCc -3'
miRNA:   3'- guCCGG-AGu---UUGAG-GAGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 125906 0.66 0.859136
Target:  5'- gGGGCCUCAccgagcuggagagaaGGgUCCggCCAccgcggucgagUCCCCCg -3'
miRNA:   3'- gUCCGGAGU---------------UUgAGGa-GGU-----------AGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 119494 0.66 0.863632
Target:  5'- --cGCaCUCcAACUCCUCag-CCCCCUc -3'
miRNA:   3'- gucCG-GAGuUUGAGGAGguaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 73025 0.66 0.870964
Target:  5'- aCAGG-CUCAGGC-CCUCguUCCacggCCCg -3'
miRNA:   3'- -GUCCgGAGUUUGaGGAGguAGGg---GGG- -5'
28823 3' -57.4 NC_006146.1 + 141253 0.66 0.870964
Target:  5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3'
miRNA:   3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 144331 0.66 0.870964
Target:  5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3'
miRNA:   3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 147409 0.66 0.870964
Target:  5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3'
miRNA:   3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 150487 0.66 0.870964
Target:  5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3'
miRNA:   3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 153565 0.66 0.870964
Target:  5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3'
miRNA:   3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.