miRNA display CGI


Results 41 - 60 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 3' -57.4 NC_006146.1 + 16138 0.68 0.788442
Target:  5'- cCGGGCCcCAAggcggccGC-CCUCaGUCCCCCa -3'
miRNA:   3'- -GUCCGGaGUU-------UGaGGAGgUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 16612 0.66 0.856098
Target:  5'- aGGGaCC-CGAGCagCC-CCGUCCCCgCCc -3'
miRNA:   3'- gUCC-GGaGUUUGa-GGaGGUAGGGG-GG- -5'
28823 3' -57.4 NC_006146.1 + 16669 0.72 0.524812
Target:  5'- gGGGCCUCccaGGGC-CCUCCAgUCCagaCCCa -3'
miRNA:   3'- gUCCGGAG---UUUGaGGAGGU-AGGg--GGG- -5'
28823 3' -57.4 NC_006146.1 + 16725 0.69 0.742921
Target:  5'- cCAGcaGCCUCuccccuccCUCCUCCccucuUCCCCCUc -3'
miRNA:   3'- -GUC--CGGAGuuu-----GAGGAGGu----AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 16873 0.67 0.815619
Target:  5'- --cGCCUCc--CUCC-CCggCCCCCCu -3'
miRNA:   3'- gucCGGAGuuuGAGGaGGuaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 16943 0.72 0.573918
Target:  5'- -cGGCC-CGGugUgCCagCGUCCCCCCa -3'
miRNA:   3'- guCCGGaGUUugA-GGagGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 17002 0.69 0.742921
Target:  5'- --cGCCUCcccCUCCUCUcUCCCUCCc -3'
miRNA:   3'- gucCGGAGuuuGAGGAGGuAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 17130 0.79 0.231305
Target:  5'- gCAGGCC--AGGC-CCUCCGUCCUCCCu -3'
miRNA:   3'- -GUCCGGagUUUGaGGAGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 17355 0.66 0.885002
Target:  5'- gAGGCC-CAGuccACUCagccccgugUCCAcugcccaguUCCCCCCa -3'
miRNA:   3'- gUCCGGaGUU---UGAGg--------AGGU---------AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 17975 0.68 0.771124
Target:  5'- cCAGGCCU--AACUUcuaaCUCUGUCCCCUUc -3'
miRNA:   3'- -GUCCGGAguUUGAG----GAGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 18333 0.66 0.885002
Target:  5'- uCGGGCUUCAu-CUCCUUCuuuaaaaaCCCCUu -3'
miRNA:   3'- -GUCCGGAGUuuGAGGAGGuag-----GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 18477 0.79 0.225827
Target:  5'- cCGGGCUUCAGGCccgCCUCaGUCCCCUCg -3'
miRNA:   3'- -GUCCGGAGUUUGa--GGAGgUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 18511 0.8 0.195238
Target:  5'- uGGGCCUCAGGC-CCUCCGcgUCCCCguCCu -3'
miRNA:   3'- gUCCGGAGUUUGaGGAGGU--AGGGG--GG- -5'
28823 3' -57.4 NC_006146.1 + 18618 0.7 0.674243
Target:  5'- gGGGCCuuUCAGGC-CCUCgGgCCCCUCu -3'
miRNA:   3'- gUCCGG--AGUUUGaGGAGgUaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 18677 0.75 0.406277
Target:  5'- -cGGCCUCcu-CUCCUCCcugccuUCCCUCCc -3'
miRNA:   3'- guCCGGAGuuuGAGGAGGu-----AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 19216 0.68 0.788442
Target:  5'- cCGGGCCcCAAggcggccGC-CCUCaGUCCCCCa -3'
miRNA:   3'- -GUCCGGaGUU-------UGaGGAGgUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 19690 0.66 0.856098
Target:  5'- aGGGaCC-CGAGCagCC-CCGUCCCCgCCc -3'
miRNA:   3'- gUCC-GGaGUUUGa-GGaGGUAGGGG-GG- -5'
28823 3' -57.4 NC_006146.1 + 19747 0.72 0.524812
Target:  5'- gGGGCCUCccaGGGC-CCUCCAgUCCagaCCCa -3'
miRNA:   3'- gUCCGGAG---UUUGaGGAGGU-AGGg--GGG- -5'
28823 3' -57.4 NC_006146.1 + 19803 0.69 0.742921
Target:  5'- cCAGcaGCCUCuccccuccCUCCUCCccucuUCCCCCUc -3'
miRNA:   3'- -GUC--CGGAGuuu-----GAGGAGGu----AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 20020 0.66 0.878089
Target:  5'- -cGGCC-CGGugUgCCagCGUCCCCCg -3'
miRNA:   3'- guCCGGaGUUugA-GGagGUAGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.