miRNA display CGI


Results 21 - 40 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 3' -57.4 NC_006146.1 + 12354 0.8 0.195238
Target:  5'- uGGGCCUCAGGC-CCUCCGcgUCCCCguCCu -3'
miRNA:   3'- gUCCGGAGUUUGaGGAGGU--AGGGG--GG- -5'
28823 3' -57.4 NC_006146.1 + 12461 0.7 0.674243
Target:  5'- gGGGCCuuUCAGGC-CCUCgGgCCCCUCu -3'
miRNA:   3'- gUCCGG--AGUUUGaGGAGgUaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 12520 0.75 0.406277
Target:  5'- -cGGCCUCcu-CUCCUCCcugccuUCCCUCCc -3'
miRNA:   3'- guCCGGAGuuuGAGGAGGu-----AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 13060 0.68 0.788442
Target:  5'- cCGGGCCcCAAggcggccGC-CCUCaGUCCCCCa -3'
miRNA:   3'- -GUCCGGaGUU-------UGaGGAGgUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 13534 0.66 0.856098
Target:  5'- aGGGaCC-CGAGCagCC-CCGUCCCCgCCc -3'
miRNA:   3'- gUCC-GGaGUUUGa-GGaGGUAGGGG-GG- -5'
28823 3' -57.4 NC_006146.1 + 13591 0.72 0.524812
Target:  5'- gGGGCCUCccaGGGC-CCUCCAgUCCagaCCCa -3'
miRNA:   3'- gUCCGGAG---UUUGaGGAGGU-AGGg--GGG- -5'
28823 3' -57.4 NC_006146.1 + 13647 0.69 0.742921
Target:  5'- cCAGcaGCCUCuccccuccCUCCUCCccucuUCCCCCUc -3'
miRNA:   3'- -GUC--CGGAGuuu-----GAGGAGGu----AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 13795 0.67 0.815619
Target:  5'- --cGCCUCc--CUCC-CCggCCCCCCu -3'
miRNA:   3'- gucCGGAGuuuGAGGaGGuaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 13865 0.66 0.878089
Target:  5'- -cGGCC-CGGugUgCCagCGUCCCCCg -3'
miRNA:   3'- guCCGGaGUUugA-GGagGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 13925 0.69 0.742921
Target:  5'- --cGCCUCcccCUCCUCUcUCCCUCCc -3'
miRNA:   3'- gucCGGAGuuuGAGGAGGuAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 14052 0.79 0.231305
Target:  5'- gCAGGCC--AGGC-CCUCCGUCCUCCCu -3'
miRNA:   3'- -GUCCGGagUUUGaGGAGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 14229 0.67 0.815619
Target:  5'- gCGGGCCUUcuggccgaguuGGACgcccUCCUCCuUCCCCg- -3'
miRNA:   3'- -GUCCGGAG-----------UUUG----AGGAGGuAGGGGgg -5'
28823 3' -57.4 NC_006146.1 + 14277 0.66 0.885002
Target:  5'- gAGGCC-CAGuccACUCagccccgugUCCAcugcccaguUCCCCCCa -3'
miRNA:   3'- gUCCGGaGUU---UGAGg--------AGGU---------AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 14370 0.66 0.870964
Target:  5'- uCGGGUCcCGGGaucucgCCUCCcgCUCCCCu -3'
miRNA:   3'- -GUCCGGaGUUUga----GGAGGuaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 14852 0.68 0.780296
Target:  5'- aCAGGggucuucuaCCUCAcucuAGC-CCUCCAggCCCUCCg -3'
miRNA:   3'- -GUCC---------GGAGU----UUGaGGAGGUa-GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 14898 0.68 0.771124
Target:  5'- cCAGGCCU--AACUUcuaaCUCUGUCCCCUUc -3'
miRNA:   3'- -GUCCGGAguUUGAG----GAGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 15399 0.79 0.225827
Target:  5'- cCGGGCUUCAGGCccgCCUCaGUCCCCUCg -3'
miRNA:   3'- -GUCCGGAGUUUGa--GGAGgUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 15433 0.8 0.195238
Target:  5'- uGGGCCUCAGGC-CCUCCGcgUCCCCguCCu -3'
miRNA:   3'- gUCCGGAGUUUGaGGAGGU--AGGGG--GG- -5'
28823 3' -57.4 NC_006146.1 + 15540 0.7 0.674243
Target:  5'- gGGGCCuuUCAGGC-CCUCgGgCCCCUCu -3'
miRNA:   3'- gUCCGG--AGUUUGaGGAGgUaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 15599 0.75 0.406277
Target:  5'- -cGGCCUCcu-CUCCUCCcugccuUCCCUCCc -3'
miRNA:   3'- guCCGGAGuuuGAGGAGGu-----AGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.