miRNA display CGI


Results 21 - 40 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 3' -57.4 NC_006146.1 + 153565 0.66 0.870964
Target:  5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3'
miRNA:   3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 151341 0.7 0.674243
Target:  5'- gAGGCaccCUgAGguGCUCCUCCGUCCUCUg -3'
miRNA:   3'- gUCCG---GAgUU--UGAGGAGGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 151255 0.68 0.771124
Target:  5'- -uGGCCgugggaAAGC-CCUCC-UCCCCCa -3'
miRNA:   3'- guCCGGag----UUUGaGGAGGuAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 150928 0.66 0.878089
Target:  5'- gGGGCCUCcuga-CCUCgCAgacgCCCCCg -3'
miRNA:   3'- gUCCGGAGuuugaGGAG-GUa---GGGGGg -5'
28823 3' -57.4 NC_006146.1 + 150624 0.68 0.798248
Target:  5'- cCAGGCC-CGAGggucaCCUaaaGUCCCCCCu -3'
miRNA:   3'- -GUCCGGaGUUUga---GGAgg-UAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 150487 0.66 0.870964
Target:  5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3'
miRNA:   3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 150019 0.67 0.824067
Target:  5'- aAGGCCUUGGcccGCUCCagCAUCgugcgCCCCUg -3'
miRNA:   3'- gUCCGGAGUU---UGAGGagGUAG-----GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 149848 0.69 0.733321
Target:  5'- aGGGCCUCGgcgaAGCgcagCgUCUcgCCCUCCg -3'
miRNA:   3'- gUCCGGAGU----UUGa---GgAGGuaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 149686 0.66 0.878089
Target:  5'- gCAGGCCguu--UUCCUaCCAgcUCCaCCCCc -3'
miRNA:   3'- -GUCCGGaguuuGAGGA-GGU--AGG-GGGG- -5'
28823 3' -57.4 NC_006146.1 + 149289 0.67 0.835608
Target:  5'- cCGGGuCCUCGGccauCUCCguuuuucuugcccccUUgAUCCCCCCc -3'
miRNA:   3'- -GUCC-GGAGUUu---GAGG---------------AGgUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 148983 0.68 0.752427
Target:  5'- -uGGCCUCugccAGCUUC-CCcgCCCCUCc -3'
miRNA:   3'- guCCGGAGu---UUGAGGaGGuaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 148909 0.67 0.832346
Target:  5'- gGGGUCUU--GC-CCUCCAccagcuUCCCCgCCa -3'
miRNA:   3'- gUCCGGAGuuUGaGGAGGU------AGGGG-GG- -5'
28823 3' -57.4 NC_006146.1 + 148263 0.7 0.674243
Target:  5'- gAGGCaccCUgAGguGCUCCUCCGUCCUCUg -3'
miRNA:   3'- gUCCG---GAgUU--UGAGGAGGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 147546 0.68 0.798248
Target:  5'- cCAGGCC-CGAGggucaCCUaaaGUCCCCCCu -3'
miRNA:   3'- -GUCCGGaGUUUga---GGAgg-UAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 147409 0.66 0.870964
Target:  5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3'
miRNA:   3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 146900 0.67 0.815619
Target:  5'- -cGGUCUCGAguuccucgcGCgUCCUCUuUCgCCCCCu -3'
miRNA:   3'- guCCGGAGUU---------UG-AGGAGGuAG-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 145185 0.7 0.674243
Target:  5'- gAGGCaccCUgAGguGCUCCUCCGUCCUCUg -3'
miRNA:   3'- gUCCG---GAgUU--UGAGGAGGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 144679 0.68 0.795591
Target:  5'- -uGGCCUCGGuGCUUCUCCAcgaccuggucuuguUCCCaggCCg -3'
miRNA:   3'- guCCGGAGUU-UGAGGAGGU--------------AGGGg--GG- -5'
28823 3' -57.4 NC_006146.1 + 144636 0.67 0.840449
Target:  5'- cCAGGCU---AAUUCCgccacCCGUgCCCCCa -3'
miRNA:   3'- -GUCCGGaguUUGAGGa----GGUAgGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 144468 0.68 0.798248
Target:  5'- cCAGGCC-CGAGggucaCCUaaaGUCCCCCCu -3'
miRNA:   3'- -GUCCGGaGUUUga---GGAgg-UAGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.