miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 3' -57.4 NC_006146.1 + 168988 0.66 0.856098
Target:  5'- gUAGaGCCUUu-GCUCCUgUAcguUCCCCUCa -3'
miRNA:   3'- -GUC-CGGAGuuUGAGGAgGU---AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 168001 0.66 0.878089
Target:  5'- uGGGCgUCAGGC-CCUC--UCCUCCUc -3'
miRNA:   3'- gUCCGgAGUUUGaGGAGguAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 167645 0.7 0.684222
Target:  5'- -uGGCCUgcgccgucccCAGGC-CC-CUAUCCCCCCc -3'
miRNA:   3'- guCCGGA----------GUUUGaGGaGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 167610 0.7 0.644139
Target:  5'- gUAGGUUUCGAcguACUgCUUUAUCCCCCg -3'
miRNA:   3'- -GUCCGGAGUU---UGAgGAGGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 167524 0.68 0.761831
Target:  5'- aGGGCCUguaGGACgCCgcggCCGuugauuuucUCCCCCCg -3'
miRNA:   3'- gUCCGGAg--UUUGaGGa---GGU---------AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 164972 0.68 0.780296
Target:  5'- uGGGcCCUCAuug-CCUCCGUCUCCa- -3'
miRNA:   3'- gUCC-GGAGUuugaGGAGGUAGGGGgg -5'
28823 3' -57.4 NC_006146.1 + 164897 0.69 0.713875
Target:  5'- uGGGcCCUCGuug-CCUCCAUCUCCUUc -3'
miRNA:   3'- gUCC-GGAGUuugaGGAGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 164809 0.68 0.751481
Target:  5'- --uGCCUCcauUUCCUCCGUCuccaucuCCCCCa -3'
miRNA:   3'- gucCGGAGuuuGAGGAGGUAG-------GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 161354 0.68 0.779385
Target:  5'- gAGGUCUguauuccCAGACUUCUCCA-CCCUCa -3'
miRNA:   3'- gUCCGGA-------GUUUGAGGAGGUaGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 160963 0.66 0.863632
Target:  5'- cCAGGCuuuucgCUCAGcuGCUCCugcucgcgggcUCCGUCgCCUCCu -3'
miRNA:   3'- -GUCCG------GAGUU--UGAGG-----------AGGUAG-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 157812 0.69 0.723636
Target:  5'- cCAGGUC-CGAguACUCCUCCGcgCUggCCCCg -3'
miRNA:   3'- -GUCCGGaGUU--UGAGGAGGUa-GG--GGGG- -5'
28823 3' -57.4 NC_006146.1 + 157497 0.7 0.674243
Target:  5'- gAGGCaccCUgAGguGCUCCUCCGUCCUCUg -3'
miRNA:   3'- gUCCG---GAgUU--UGAGGAGGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 156779 0.68 0.798248
Target:  5'- cCAGGCC-CGAGggucaCCUaaaGUCCCCCCu -3'
miRNA:   3'- -GUCCGGaGUUUga---GGAgg-UAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 156643 0.66 0.870964
Target:  5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3'
miRNA:   3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 155862 0.67 0.832346
Target:  5'- gCAGGCCcggCGGGC-CCUggCCAggcgCCCCUCc -3'
miRNA:   3'- -GUCCGGa--GUUUGaGGA--GGUa---GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 155604 0.77 0.313007
Target:  5'- -uGGCCUCcGGCcCCUCC-UCCCCCUc -3'
miRNA:   3'- guCCGGAGuUUGaGGAGGuAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 155395 0.68 0.789341
Target:  5'- gCAGGCCau---CUCCcaguacaccaCGUCCCCCCa -3'
miRNA:   3'- -GUCCGGaguuuGAGGag--------GUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 154898 0.66 0.891698
Target:  5'- aGGGCCUCGcccgGGCUgaCCg-CGUCCgCCCu -3'
miRNA:   3'- gUCCGGAGU----UUGA--GGagGUAGGgGGG- -5'
28823 3' -57.4 NC_006146.1 + 154419 0.7 0.674243
Target:  5'- gAGGCaccCUgAGguGCUCCUCCGUCCUCUg -3'
miRNA:   3'- gUCCG---GAgUU--UGAGGAGGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 153701 0.68 0.798248
Target:  5'- cCAGGCC-CGAGggucaCCUaaaGUCCCCCCu -3'
miRNA:   3'- -GUCCGGaGUUUga---GGAgg-UAGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.