miRNA display CGI


Results 21 - 40 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 3' -57.4 NC_006146.1 + 17130 0.79 0.231305
Target:  5'- gCAGGCC--AGGC-CCUCCGUCCUCCCu -3'
miRNA:   3'- -GUCCGGagUUUGaGGAGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 45168 0.78 0.270302
Target:  5'- gAGGCCUCGGaaucggcggcggcGCuccccuccucaucuUCCUCCGUCUCCCCu -3'
miRNA:   3'- gUCCGGAGUU-------------UG--------------AGGAGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 48285 0.77 0.313007
Target:  5'- aGGGCCcCGGcCUCCUCCG-CCCCUCg -3'
miRNA:   3'- gUCCGGaGUUuGAGGAGGUaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 155604 0.77 0.313007
Target:  5'- -uGGCCUCcGGCcCCUCC-UCCCCCUc -3'
miRNA:   3'- guCCGGAGuUUGaGGAGGuAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 119065 0.76 0.357515
Target:  5'- cCAGGCCcCGAGCcccCCUCCAcgCCgCCCCg -3'
miRNA:   3'- -GUCCGGaGUUUGa--GGAGGUa-GG-GGGG- -5'
28823 3' -57.4 NC_006146.1 + 133208 0.75 0.405431
Target:  5'- cUAGGUCUCAccugGGCUCCUugccucguugcccCCAgCCCCCCu -3'
miRNA:   3'- -GUCCGGAGU----UUGAGGA-------------GGUaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 18677 0.75 0.406277
Target:  5'- -cGGCCUCcu-CUCCUCCcugccuUCCCUCCc -3'
miRNA:   3'- guCCGGAGuuuGAGGAGGu-----AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 12520 0.75 0.406277
Target:  5'- -cGGCCUCcu-CUCCUCCcugccuUCCCUCCc -3'
miRNA:   3'- guCCGGAGuuuGAGGAGGu-----AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 15599 0.75 0.406277
Target:  5'- -cGGCCUCcu-CUCCUCCcugccuUCCCUCCc -3'
miRNA:   3'- guCCGGAGuuuGAGGAGGu-----AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 21755 0.75 0.406277
Target:  5'- -cGGCCUCcu-CUCCUCCcugccuUCCCUCCc -3'
miRNA:   3'- guCCGGAGuuuGAGGAGGu-----AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 27911 0.75 0.406277
Target:  5'- -cGGCCUCcu-CUCCUCCcugccuUCCCUCCc -3'
miRNA:   3'- guCCGGAGuuuGAGGAGGu-----AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 24833 0.75 0.406277
Target:  5'- -cGGCCUCcu-CUCCUCCcugccuUCCCUCCc -3'
miRNA:   3'- guCCGGAGuuuGAGGAGGu-----AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 111347 0.75 0.414801
Target:  5'- -uGGcCCUCAu-CUCCUCCAUCgccacgcugcaCCCCCa -3'
miRNA:   3'- guCC-GGAGUuuGAGGAGGUAG-----------GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 92813 0.74 0.432175
Target:  5'- cCGGGCCUCGcaaUCCUCCA-CCacaCCCa -3'
miRNA:   3'- -GUCCGGAGUuugAGGAGGUaGGg--GGG- -5'
28823 3' -57.4 NC_006146.1 + 31260 0.74 0.439242
Target:  5'- gCAGGCCUC---CUCCUCCucaacacaugccUCCCCCa -3'
miRNA:   3'- -GUCCGGAGuuuGAGGAGGu-----------AGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 55920 0.73 0.476458
Target:  5'- -uGGCCUUGAugUCCgcggCCGUgggcugcugcgugCCCCCCg -3'
miRNA:   3'- guCCGGAGUUugAGGa---GGUA-------------GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 100297 0.73 0.486708
Target:  5'- gCAGGCCugcaccgcgaUCAGAguCUCCacaUCC-UCCCCCCg -3'
miRNA:   3'- -GUCCGG----------AGUUU--GAGG---AGGuAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 128604 0.73 0.515172
Target:  5'- aGGGCaCUCcggcucccGCUCCUCC-UCCCCgCCa -3'
miRNA:   3'- gUCCG-GAGuu------UGAGGAGGuAGGGG-GG- -5'
28823 3' -57.4 NC_006146.1 + 13591 0.72 0.524812
Target:  5'- gGGGCCUCccaGGGC-CCUCCAgUCCagaCCCa -3'
miRNA:   3'- gUCCGGAG---UUUGaGGAGGU-AGGg--GGG- -5'
28823 3' -57.4 NC_006146.1 + 55330 0.72 0.524812
Target:  5'- aCAGGCuCUCGAguagggccGCggucgCCUCCAgCCCCCg -3'
miRNA:   3'- -GUCCG-GAGUU--------UGa----GGAGGUaGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.