miRNA display CGI


Results 61 - 80 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 135175 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 135361 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 135454 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 135732 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 135825 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136011 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 49521 0.67 0.681411
Target:  5'- -cGGcGGGuGAuCCGGGGGcuccUCUGGGGGCg -3'
miRNA:   3'- uaCCaUCC-CU-GGCCCUC----AGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 154735 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 147602 0.68 0.651777
Target:  5'- -gGGUGGGGagugGCCaGGGAGgaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCa-GgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 153757 0.68 0.651777
Target:  5'- -gGGUGGGGagugGCCaGGGAGgaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCa-GgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 156835 0.68 0.651777
Target:  5'- -gGGUGGGGagugGCCaGGGAGgaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCa-GgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 81529 1.07 0.001909
Target:  5'- gAUGGUAGGGACCGGGAGUCCGAGGACu -3'
miRNA:   3'- -UACCAUCCCUGGCCCUCAGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 137046 0.83 0.091144
Target:  5'- -gGGUGGGGGCCuGGGGuUCCGGGGACc -3'
miRNA:   3'- uaCCAUCCCUGGcCCUC-AGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 137233 0.83 0.091144
Target:  5'- -gGGUGGGGGCCuGGGGUcCCGGGGACc -3'
miRNA:   3'- uaCCAUCCCUGGcCCUCA-GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 76393 0.76 0.250915
Target:  5'- -cGGgggAGGGACCGGGGGcgCCGAcGGCg -3'
miRNA:   3'- uaCCa--UCCCUGGCCCUCa-GGCUcCUG- -5'
28823 5' -60 NC_006146.1 + 8428 0.68 0.651777
Target:  5'- -cGGacccUGGGGACCaGGAGagcUCGGGGGCg -3'
miRNA:   3'- uaCC----AUCCCUGGcCCUCa--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 144781 0.68 0.67156
Target:  5'- -cGGUGGGGagacaaGCUGaGGGGggCCGGGGAg -3'
miRNA:   3'- uaCCAUCCC------UGGC-CCUCa-GGCUCCUg -5'
28823 5' -60 NC_006146.1 + 157750 0.67 0.729927
Target:  5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 88851 0.66 0.739425
Target:  5'- -aGGUAGGGaAUCGGcGGGgCCuGGGGCu -3'
miRNA:   3'- uaCCAUCCC-UGGCC-CUCaGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 124523 0.66 0.739425
Target:  5'- cUGGcgAGGGA-CGGGGGcCUGGGGGa -3'
miRNA:   3'- uACCa-UCCCUgGCCCUCaGGCUCCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.