miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 135825 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 22108 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 153383 0.71 0.495008
Target:  5'- gAUGGUggccggauuguugAGGGugCcaaGGGAGUucCCGGGGGCg -3'
miRNA:   3'- -UACCA-------------UCCCugG---CCCUCA--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 135732 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 44313 0.71 0.459345
Target:  5'- aGUGGgggcuGGGGCCGuGGcAG-CCGGGGGCu -3'
miRNA:   3'- -UACCau---CCCUGGC-CC-UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 137498 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 168347 0.71 0.49594
Target:  5'- cUGGcGGGGGCCagcgcGGGGUCCcGGGGCg -3'
miRNA:   3'- uACCaUCCCUGGc----CCUCAGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 137405 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 137312 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136940 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136662 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136290 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136011 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 135454 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 135175 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 169737 0.68 0.66168
Target:  5'- -cGGcgcgGGGGAgccCCGGGgcGGcCCGGGGACc -3'
miRNA:   3'- uaCCa---UCCCU---GGCCC--UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 28264 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 154560 0.68 0.631934
Target:  5'- -cGGacgAGGGACauuGGAuGUCCGAGGAg -3'
miRNA:   3'- uaCCa--UCCCUGgc-CCU-CAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 170429 0.69 0.592306
Target:  5'- -gGGUcccgcGGGGcccggcgcguGCCGGGGGacCCGGGGGCg -3'
miRNA:   3'- uaCCA-----UCCC----------UGGCCCUCa-GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 45526 0.69 0.582451
Target:  5'- -cGGUGGGGGCCuGGGccUCCuuGGGCu -3'
miRNA:   3'- uaCCAUCCCUGG-CCCucAGGcuCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.