miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 141704 0.68 0.631934
Target:  5'- -cGGUGGGGagacaGCUGaGGGGggCCGGGGAg -3'
miRNA:   3'- uaCCAUCCC-----UGGC-CCUCa-GGCUCCUg -5'
28823 5' -60 NC_006146.1 + 51839 0.68 0.631934
Target:  5'- cGUGGagGGGGGCuCGGGgccuggcccgAGcCCGGGGAUg -3'
miRNA:   3'- -UACCa-UCCCUG-GCCC----------UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 154560 0.68 0.631934
Target:  5'- -cGGacgAGGGACauuGGAuGUCCGAGGAg -3'
miRNA:   3'- uaCCa--UCCCUGgc-CCU-CAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 55088 0.68 0.631934
Target:  5'- ----cAGGGACCuGaGGAGUUCaGAGGACa -3'
miRNA:   3'- uaccaUCCCUGG-C-CCUCAGG-CUCCUG- -5'
28823 5' -60 NC_006146.1 + 8428 0.68 0.651777
Target:  5'- -cGGacccUGGGGACCaGGAGagcUCGGGGGCg -3'
miRNA:   3'- uaCC----AUCCCUGGcCCUCa--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 147602 0.68 0.651777
Target:  5'- -gGGUGGGGagugGCCaGGGAGgaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCa-GgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 144524 0.68 0.651777
Target:  5'- -gGGUGGGGagugGCCaGGGAGgaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCa-GgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 153757 0.68 0.651777
Target:  5'- -gGGUGGGGagugGCCaGGGAGgaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCa-GgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 141446 0.68 0.651777
Target:  5'- -gGGUGGGGagugGCCaGGGAGgaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCa-GgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 156835 0.68 0.651777
Target:  5'- -gGGUGGGGagugGCCaGGGAGgaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCa-GgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 169737 0.68 0.66168
Target:  5'- -cGGcgcgGGGGAgccCCGGGgcGGcCCGGGGACc -3'
miRNA:   3'- uaCCa---UCCCU---GGCCC--UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 25186 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 167873 0.68 0.66168
Target:  5'- -cGGcgcgGGGGAgccCCGGGgcGGcCCGGGGACc -3'
miRNA:   3'- uaCCa---UCCCU---GGCCC--UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 168805 0.68 0.66168
Target:  5'- -cGGcgcgGGGGAgccCCGGGgcGGcCCGGGGACc -3'
miRNA:   3'- uaCCa---UCCCU---GGCCC--UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 28264 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 22108 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 19030 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 12875 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 147859 0.68 0.67156
Target:  5'- -cGGUGGGGagacaaGCUGaGGGGggCCGGGGAg -3'
miRNA:   3'- uaCCAUCCC------UGGC-CCUCa-GGCUCCUg -5'
28823 5' -60 NC_006146.1 + 144781 0.68 0.67156
Target:  5'- -cGGUGGGGagacaaGCUGaGGGGggCCGGGGAg -3'
miRNA:   3'- uaCCAUCCC------UGGC-CCUCa-GGCUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.