Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28823 | 5' | -60 | NC_006146.1 | + | 124523 | 0.66 | 0.739425 |
Target: 5'- cUGGcgAGGGA-CGGGGGcCUGGGGGa -3' miRNA: 3'- uACCa-UCCCUgGCCCUCaGGCUCCUg -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 135175 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 135268 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 135361 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 135454 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 135547 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 135640 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 135732 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 135825 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 135918 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136011 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136104 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136197 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136290 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136383 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136476 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136569 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136662 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136754 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136847 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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