Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28823 | 5' | -60 | NC_006146.1 | + | 136754 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 13935 | 0.67 | 0.681411 |
Target: 5'- -gGGU-GGGcCCGGGGGagCCcAGGACa -3' miRNA: 3'- uaCCAuCCCuGGCCCUCa-GGcUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 43597 | 0.67 | 0.681411 |
Target: 5'- -gGGgcGGGagGCCGGGucgGGUCgGGGGAa -3' miRNA: 3'- uaCCauCCC--UGGCCC---UCAGgCUCCUg -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 142361 | 0.67 | 0.729927 |
Target: 5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3' miRNA: 3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 145439 | 0.67 | 0.729927 |
Target: 5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3' miRNA: 3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 148517 | 0.67 | 0.729927 |
Target: 5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3' miRNA: 3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 151595 | 0.67 | 0.729927 |
Target: 5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3' miRNA: 3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136940 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 137312 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 51719 | 0.67 | 0.691223 |
Target: 5'- gGUGGUGGaGGACaugGGGAGgcggcgccCCGAGGu- -3' miRNA: 3'- -UACCAUC-CCUGg--CCCUCa-------GGCUCCug -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136011 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 135918 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136569 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136476 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 136383 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 135175 | 0.67 | 0.691223 |
Target: 5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3' miRNA: 3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 113676 | 0.67 | 0.700989 |
Target: 5'- gGUGGcucGGGcCCGGGcccggccuccGGcCCGGGGACg -3' miRNA: 3'- -UACCau-CCCuGGCCC----------UCaGGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 167873 | 0.68 | 0.66168 |
Target: 5'- -cGGcgcgGGGGAgccCCGGGgcGGcCCGGGGACc -3' miRNA: 3'- uaCCa---UCCCU---GGCCC--UCaGGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 147602 | 0.68 | 0.651777 |
Target: 5'- -gGGUGGGGagugGCCaGGGAGgaCgGAGGGCc -3' miRNA: 3'- uaCCAUCCC----UGG-CCCUCa-GgCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 28264 | 0.68 | 0.66168 |
Target: 5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3' miRNA: 3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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