miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 145439 0.67 0.729927
Target:  5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 51719 0.67 0.691223
Target:  5'- gGUGGUGGaGGACaugGGGAGgcggcgccCCGAGGu- -3'
miRNA:   3'- -UACCAUC-CCUGg--CCCUCa-------GGCUCCug -5'
28823 5' -60 NC_006146.1 + 135268 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 135825 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 13935 0.67 0.681411
Target:  5'- -gGGU-GGGcCCGGGGGagCCcAGGACa -3'
miRNA:   3'- uaCCAuCCCuGGCCCUCa-GGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 135361 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136011 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 135454 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136662 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136569 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 142361 0.67 0.729927
Target:  5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 43597 0.67 0.681411
Target:  5'- -gGGgcGGGagGCCGGGucgGGUCgGGGGAa -3'
miRNA:   3'- uaCCauCCC--UGGCCC---UCAGgCUCCUg -5'
28823 5' -60 NC_006146.1 + 151595 0.67 0.729927
Target:  5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 135732 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 135547 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136104 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136197 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 157750 0.67 0.729927
Target:  5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 136383 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136476 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.