miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 34072 0.82 0.109022
Target:  5'- cGUGGcacGGGGCCGGGGGUCCcgGGGGGCa -3'
miRNA:   3'- -UACCau-CCCUGGCCCUCAGG--CUCCUG- -5'
28823 5' -60 NC_006146.1 + 156523 0.68 0.67156
Target:  5'- -cGGaGGGGAgCGGGAGgcgagaUCCcGGGACc -3'
miRNA:   3'- uaCCaUCCCUgGCCCUC------AGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 169737 0.68 0.66168
Target:  5'- -cGGcgcgGGGGAgccCCGGGgcGGcCCGGGGACc -3'
miRNA:   3'- uaCCa---UCCCU---GGCCC--UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 55088 0.68 0.631934
Target:  5'- ----cAGGGACCuGaGGAGUUCaGAGGACa -3'
miRNA:   3'- uaccaUCCCUGG-C-CCUCAGG-CUCCUG- -5'
28823 5' -60 NC_006146.1 + 169279 0.71 0.49594
Target:  5'- cUGGcGGGGGCCagcgcGGGGUCCcGGGGCg -3'
miRNA:   3'- uACCaUCCCUGGc----CCUCAGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 135454 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 51719 0.67 0.691223
Target:  5'- gGUGGUGGaGGACaugGGGAGgcggcgccCCGAGGu- -3'
miRNA:   3'- -UACCAUC-CCUGg--CCCUCa-------GGCUCCug -5'
28823 5' -60 NC_006146.1 + 44313 0.71 0.459345
Target:  5'- aGUGGgggcuGGGGCCGuGGcAG-CCGGGGGCu -3'
miRNA:   3'- -UACCau---CCCUGGC-CC-UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 22108 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 12875 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 169238 0.71 0.459345
Target:  5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3'
miRNA:   3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 168306 0.71 0.459345
Target:  5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3'
miRNA:   3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 135732 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 135547 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 168805 0.68 0.66168
Target:  5'- -cGGcgcgGGGGAgccCCGGGgcGGcCCGGGGACc -3'
miRNA:   3'- uaCCa---UCCCU---GGCCC--UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 166768 0.69 0.582451
Target:  5'- aGUGGcgaGGGGACCaggagGGGAGUuuGAaaaGGGCa -3'
miRNA:   3'- -UACCa--UCCCUGG-----CCCUCAggCU---CCUG- -5'
28823 5' -60 NC_006146.1 + 170210 0.71 0.49594
Target:  5'- cUGGcGGGGGCCagcgcGGGGUCCcGGGGCg -3'
miRNA:   3'- uACCaUCCCUGGc----CCUCAGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 167374 0.71 0.459345
Target:  5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3'
miRNA:   3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 154560 0.68 0.631934
Target:  5'- -cGGacgAGGGACauuGGAuGUCCGAGGAg -3'
miRNA:   3'- uaCCa--UCCCUGgc-CCU-CAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 25186 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.