miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 44019 0.66 0.767357
Target:  5'- -cGGcGGGGA--GGGGGcggCCGAGGGCc -3'
miRNA:   3'- uaCCaUCCCUggCCCUCa--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 44313 0.71 0.459345
Target:  5'- aGUGGgggcuGGGGCCGuGGcAG-CCGGGGGCu -3'
miRNA:   3'- -UACCau---CCCUGGC-CC-UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 44549 0.73 0.351462
Target:  5'- cUGGaaaAGGGGCCGGGGcUCCGGGuGGCu -3'
miRNA:   3'- uACCa--UCCCUGGCCCUcAGGCUC-CUG- -5'
28823 5' -60 NC_006146.1 + 44943 0.67 0.710701
Target:  5'- cGUGGccAGGGGCgCgGGGAGgccCCGGGGGa -3'
miRNA:   3'- -UACCa-UCCCUG-G-CCCUCa--GGCUCCUg -5'
28823 5' -60 NC_006146.1 + 45078 0.7 0.505296
Target:  5'- -cGGUc-GGACUGcGAGUCUGAGGACg -3'
miRNA:   3'- uaCCAucCCUGGCcCUCAGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 45526 0.69 0.582451
Target:  5'- -cGGUGGGGGCCuGGGccUCCuuGGGCu -3'
miRNA:   3'- uaCCAUCCCUGG-CCCucAGGcuCCUG- -5'
28823 5' -60 NC_006146.1 + 49474 0.66 0.776453
Target:  5'- gAUGGUGaGGGCCGcGGuGUCgGccaGGGGCg -3'
miRNA:   3'- -UACCAUcCCUGGC-CCuCAGgC---UCCUG- -5'
28823 5' -60 NC_006146.1 + 49521 0.67 0.681411
Target:  5'- -cGGcGGGuGAuCCGGGGGcuccUCUGGGGGCg -3'
miRNA:   3'- uaCCaUCC-CU-GGCCCUC----AGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 51582 0.66 0.748835
Target:  5'- -cGGgAGGGGcCCGGGGGagCCaGAGGGg -3'
miRNA:   3'- uaCCaUCCCU-GGCCCUCa-GG-CUCCUg -5'
28823 5' -60 NC_006146.1 + 51719 0.67 0.691223
Target:  5'- gGUGGUGGaGGACaugGGGAGgcggcgccCCGAGGu- -3'
miRNA:   3'- -UACCAUC-CCUGg--CCCUCa-------GGCUCCug -5'
28823 5' -60 NC_006146.1 + 51839 0.68 0.631934
Target:  5'- cGUGGagGGGGGCuCGGGgccuggcccgAGcCCGGGGAUg -3'
miRNA:   3'- -UACCa-UCCCUG-GCCC----------UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 55088 0.68 0.631934
Target:  5'- ----cAGGGACCuGaGGAGUUCaGAGGACa -3'
miRNA:   3'- uaccaUCCCUGG-C-CCUCAGG-CUCCUG- -5'
28823 5' -60 NC_006146.1 + 61831 0.73 0.380285
Target:  5'- cUGGUGGGGgcaguggggcugguGCCGGGAcUCCcGGGGCa -3'
miRNA:   3'- uACCAUCCC--------------UGGCCCUcAGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 76393 0.76 0.250915
Target:  5'- -cGGgggAGGGACCGGGGGcgCCGAcGGCg -3'
miRNA:   3'- uaCCa--UCCCUGGCCCUCa-GGCUcCUG- -5'
28823 5' -60 NC_006146.1 + 81529 1.07 0.001909
Target:  5'- gAUGGUAGGGACCGGGAGUCCGAGGACu -3'
miRNA:   3'- -UACCAUCCCUGGCCCUCAGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 88851 0.66 0.739425
Target:  5'- -aGGUAGGGaAUCGGcGGGgCCuGGGGCu -3'
miRNA:   3'- uaCCAUCCC-UGGCC-CUCaGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 89403 0.66 0.739425
Target:  5'- gAUGG-GGGGAUgGaGGAGUuuGAGGcCu -3'
miRNA:   3'- -UACCaUCCCUGgC-CCUCAggCUCCuG- -5'
28823 5' -60 NC_006146.1 + 101252 0.66 0.776453
Target:  5'- uAUGGUgGGGGACauGGuG-CUGGGGGCa -3'
miRNA:   3'- -UACCA-UCCCUGgcCCuCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 105189 0.66 0.758148
Target:  5'- aGUGaccGGGGCCgGGGAG-CCGGGGGu -3'
miRNA:   3'- -UACcauCCCUGG-CCCUCaGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 113676 0.67 0.700989
Target:  5'- gGUGGcucGGGcCCGGGcccggccuccGGcCCGGGGACg -3'
miRNA:   3'- -UACCau-CCCuGGCCC----------UCaGGCUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.