Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28823 | 5' | -60 | NC_006146.1 | + | 22 | 0.75 | 0.30128 |
Target: 5'- -gGGUugAGGGGCCGGGAuggauGUUgGGGGACu -3' miRNA: 3'- uaCCA--UCCCUGGCCCU-----CAGgCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 274 | 0.66 | 0.767357 |
Target: 5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3' miRNA: 3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 1205 | 0.66 | 0.767357 |
Target: 5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3' miRNA: 3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 2137 | 0.66 | 0.767357 |
Target: 5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3' miRNA: 3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 3069 | 0.66 | 0.767357 |
Target: 5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3' miRNA: 3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 8428 | 0.68 | 0.651777 |
Target: 5'- -cGGacccUGGGGACCaGGAGagcUCGGGGGCg -3' miRNA: 3'- uaCC----AUCCCUGGcCCUCa--GGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 12875 | 0.68 | 0.66168 |
Target: 5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3' miRNA: 3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 13935 | 0.67 | 0.681411 |
Target: 5'- -gGGU-GGGcCCGGGGGagCCcAGGACa -3' miRNA: 3'- uaCCAuCCCuGGCCCUCa-GGcUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 14842 | 0.69 | 0.592306 |
Target: 5'- -cGGgcccGGGGCCgcGGGAGgCCGAGGGg -3' miRNA: 3'- uaCCau--CCCUGG--CCCUCaGGCUCCUg -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 19030 | 0.68 | 0.66168 |
Target: 5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3' miRNA: 3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 22108 | 0.68 | 0.66168 |
Target: 5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3' miRNA: 3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 23973 | 0.69 | 0.592306 |
Target: 5'- -gGGUGGGGgaGCCGGaGAGggggCgaaaGAGGACg -3' miRNA: 3'- uaCCAUCCC--UGGCC-CUCa---Gg---CUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 25186 | 0.68 | 0.66168 |
Target: 5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3' miRNA: 3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 27899 | 0.71 | 0.468362 |
Target: 5'- -cGGaGGGGACCGGGAG-CUGcucccacggccaAGGGCu -3' miRNA: 3'- uaCCaUCCCUGGCCCUCaGGC------------UCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 28264 | 0.68 | 0.66168 |
Target: 5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3' miRNA: 3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 33229 | 0.71 | 0.477469 |
Target: 5'- -cGGgauGGGGCUGGGGuUCCGGGGGu -3' miRNA: 3'- uaCCau-CCCUGGCCCUcAGGCUCCUg -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 33318 | 0.66 | 0.767357 |
Target: 5'- -cGGUccuGGGGcuCCGGG-GUCCGggugcuccGGGGCa -3' miRNA: 3'- uaCCA---UCCCu-GGCCCuCAGGC--------UCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 34072 | 0.82 | 0.109022 |
Target: 5'- cGUGGcacGGGGCCGGGGGUCCcgGGGGGCa -3' miRNA: 3'- -UACCau-CCCUGGCCCUCAGG--CUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 37671 | 0.68 | 0.62201 |
Target: 5'- -gGGUagGGGGGCUGGGGGcaaCGAGG-Ca -3' miRNA: 3'- uaCCA--UCCCUGGCCCUCag-GCUCCuG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 43597 | 0.67 | 0.681411 |
Target: 5'- -gGGgcGGGagGCCGGGucgGGUCgGGGGAa -3' miRNA: 3'- uaCCauCCC--UGGCCC---UCAGgCUCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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