miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 22 0.75 0.30128
Target:  5'- -gGGUugAGGGGCCGGGAuggauGUUgGGGGACu -3'
miRNA:   3'- uaCCA--UCCCUGGCCCU-----CAGgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 274 0.66 0.767357
Target:  5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3'
miRNA:   3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 1205 0.66 0.767357
Target:  5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3'
miRNA:   3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 2137 0.66 0.767357
Target:  5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3'
miRNA:   3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 3069 0.66 0.767357
Target:  5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3'
miRNA:   3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 8428 0.68 0.651777
Target:  5'- -cGGacccUGGGGACCaGGAGagcUCGGGGGCg -3'
miRNA:   3'- uaCC----AUCCCUGGcCCUCa--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 12875 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 13935 0.67 0.681411
Target:  5'- -gGGU-GGGcCCGGGGGagCCcAGGACa -3'
miRNA:   3'- uaCCAuCCCuGGCCCUCa-GGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 14842 0.69 0.592306
Target:  5'- -cGGgcccGGGGCCgcGGGAGgCCGAGGGg -3'
miRNA:   3'- uaCCau--CCCUGG--CCCUCaGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 19030 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 22108 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 23973 0.69 0.592306
Target:  5'- -gGGUGGGGgaGCCGGaGAGggggCgaaaGAGGACg -3'
miRNA:   3'- uaCCAUCCC--UGGCC-CUCa---Gg---CUCCUG- -5'
28823 5' -60 NC_006146.1 + 25186 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 27899 0.71 0.468362
Target:  5'- -cGGaGGGGACCGGGAG-CUGcucccacggccaAGGGCu -3'
miRNA:   3'- uaCCaUCCCUGGCCCUCaGGC------------UCCUG- -5'
28823 5' -60 NC_006146.1 + 28264 0.68 0.66168
Target:  5'- gGUGGcUGGGcaGGCCGGGucucgGGUCUGGGGGu -3'
miRNA:   3'- -UACC-AUCC--CUGGCCC-----UCAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 33229 0.71 0.477469
Target:  5'- -cGGgauGGGGCUGGGGuUCCGGGGGu -3'
miRNA:   3'- uaCCau-CCCUGGCCCUcAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 33318 0.66 0.767357
Target:  5'- -cGGUccuGGGGcuCCGGG-GUCCGggugcuccGGGGCa -3'
miRNA:   3'- uaCCA---UCCCu-GGCCCuCAGGC--------UCCUG- -5'
28823 5' -60 NC_006146.1 + 34072 0.82 0.109022
Target:  5'- cGUGGcacGGGGCCGGGGGUCCcgGGGGGCa -3'
miRNA:   3'- -UACCau-CCCUGGCCCUCAGG--CUCCUG- -5'
28823 5' -60 NC_006146.1 + 37671 0.68 0.62201
Target:  5'- -gGGUagGGGGGCUGGGGGcaaCGAGG-Ca -3'
miRNA:   3'- uaCCA--UCCCUGGCCCUCag-GCUCCuG- -5'
28823 5' -60 NC_006146.1 + 43597 0.67 0.681411
Target:  5'- -gGGgcGGGagGCCGGGucgGGUCgGGGGAa -3'
miRNA:   3'- uaCCauCCC--UGGCCC---UCAGgCUCCUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.