Results 1 - 20 of 121 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28823 | 5' | -60 | NC_006146.1 | + | 81529 | 1.07 | 0.001909 |
Target: 5'- gAUGGUAGGGACCGGGAGUCCGAGGACu -3' miRNA: 3'- -UACCAUCCCUGGCCCUCAGGCUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 137046 | 0.83 | 0.091144 |
Target: 5'- -gGGUGGGGGCCuGGGGuUCCGGGGACc -3' miRNA: 3'- uaCCAUCCCUGGcCCUC-AGGCUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 137233 | 0.83 | 0.091144 |
Target: 5'- -gGGUGGGGGCCuGGGGUcCCGGGGACc -3' miRNA: 3'- uaCCAUCCCUGGcCCUCA-GGCUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 34072 | 0.82 | 0.109022 |
Target: 5'- cGUGGcacGGGGCCGGGGGUCCcgGGGGGCa -3' miRNA: 3'- -UACCau-CCCUGGCCCUCAGG--CUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 137905 | 0.79 | 0.166914 |
Target: 5'- cGUGGacAGGG-CCGGGGGuUCCGGGGGCa -3' miRNA: 3'- -UACCa-UCCCuGGCCCUC-AGGCUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 76393 | 0.76 | 0.250915 |
Target: 5'- -cGGgggAGGGACCGGGGGcgCCGAcGGCg -3' miRNA: 3'- uaCCa--UCCCUGGCCCUCa-GGCUcCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 22 | 0.75 | 0.30128 |
Target: 5'- -gGGUugAGGGGCCGGGAuggauGUUgGGGGACu -3' miRNA: 3'- uaCCA--UCCCUGGCCCU-----CAGgCUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 44549 | 0.73 | 0.351462 |
Target: 5'- cUGGaaaAGGGGCCGGGGcUCCGGGuGGCu -3' miRNA: 3'- uACCa--UCCCUGGCCCUcAGGCUC-CUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 167634 | 0.73 | 0.366848 |
Target: 5'- -gGGUcccgcGGGGcccggcgcguGCCGGGGGcCCGGGGGCg -3' miRNA: 3'- uaCCA-----UCCC----------UGGCCCUCaGGCUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 154673 | 0.73 | 0.374712 |
Target: 5'- -gGGUcuuGGGcCUGGGAGUCCGGGGu- -3' miRNA: 3'- uaCCAu--CCCuGGCCCUCAGGCUCCug -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 61831 | 0.73 | 0.380285 |
Target: 5'- cUGGUGGGGgcaguggggcugguGCCGGGAcUCCcGGGGCa -3' miRNA: 3'- uACCAUCCC--------------UGGCCCUcAGGcUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 167374 | 0.71 | 0.459345 |
Target: 5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3' miRNA: 3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 169238 | 0.71 | 0.459345 |
Target: 5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3' miRNA: 3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 170169 | 0.71 | 0.459345 |
Target: 5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3' miRNA: 3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 168306 | 0.71 | 0.459345 |
Target: 5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3' miRNA: 3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 44313 | 0.71 | 0.459345 |
Target: 5'- aGUGGgggcuGGGGCCGuGGcAG-CCGGGGGCu -3' miRNA: 3'- -UACCau---CCCUGGC-CC-UCaGGCUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 137403 | 0.71 | 0.459345 |
Target: 5'- -cGGgAGGGugCuGGGGUcCCGGGGACc -3' miRNA: 3'- uaCCaUCCCugGcCCUCA-GGCUCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 27899 | 0.71 | 0.468362 |
Target: 5'- -cGGaGGGGACCGGGAG-CUGcucccacggccaAGGGCu -3' miRNA: 3'- uaCCaUCCCUGGCCCUCaGGC------------UCCUG- -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 33229 | 0.71 | 0.477469 |
Target: 5'- -cGGgauGGGGCUGGGGuUCCGGGGGu -3' miRNA: 3'- uaCCau-CCCUGGCCCUcAGGCUCCUg -5' |
|||||||
28823 | 5' | -60 | NC_006146.1 | + | 153383 | 0.71 | 0.495008 |
Target: 5'- gAUGGUggccggauuguugAGGGugCcaaGGGAGUucCCGGGGGCg -3' miRNA: 3'- -UACCA-------------UCCCugG---CCCUCA--GGCUCCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home