miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 81529 1.07 0.001909
Target:  5'- gAUGGUAGGGACCGGGAGUCCGAGGACu -3'
miRNA:   3'- -UACCAUCCCUGGCCCUCAGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 137046 0.83 0.091144
Target:  5'- -gGGUGGGGGCCuGGGGuUCCGGGGACc -3'
miRNA:   3'- uaCCAUCCCUGGcCCUC-AGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 137233 0.83 0.091144
Target:  5'- -gGGUGGGGGCCuGGGGUcCCGGGGACc -3'
miRNA:   3'- uaCCAUCCCUGGcCCUCA-GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 34072 0.82 0.109022
Target:  5'- cGUGGcacGGGGCCGGGGGUCCcgGGGGGCa -3'
miRNA:   3'- -UACCau-CCCUGGCCCUCAGG--CUCCUG- -5'
28823 5' -60 NC_006146.1 + 137905 0.79 0.166914
Target:  5'- cGUGGacAGGG-CCGGGGGuUCCGGGGGCa -3'
miRNA:   3'- -UACCa-UCCCuGGCCCUC-AGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 76393 0.76 0.250915
Target:  5'- -cGGgggAGGGACCGGGGGcgCCGAcGGCg -3'
miRNA:   3'- uaCCa--UCCCUGGCCCUCa-GGCUcCUG- -5'
28823 5' -60 NC_006146.1 + 22 0.75 0.30128
Target:  5'- -gGGUugAGGGGCCGGGAuggauGUUgGGGGACu -3'
miRNA:   3'- uaCCA--UCCCUGGCCCU-----CAGgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 44549 0.73 0.351462
Target:  5'- cUGGaaaAGGGGCCGGGGcUCCGGGuGGCu -3'
miRNA:   3'- uACCa--UCCCUGGCCCUcAGGCUC-CUG- -5'
28823 5' -60 NC_006146.1 + 167634 0.73 0.366848
Target:  5'- -gGGUcccgcGGGGcccggcgcguGCCGGGGGcCCGGGGGCg -3'
miRNA:   3'- uaCCA-----UCCC----------UGGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 154673 0.73 0.374712
Target:  5'- -gGGUcuuGGGcCUGGGAGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCUCAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 61831 0.73 0.380285
Target:  5'- cUGGUGGGGgcaguggggcugguGCCGGGAcUCCcGGGGCa -3'
miRNA:   3'- uACCAUCCC--------------UGGCCCUcAGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 167374 0.71 0.459345
Target:  5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3'
miRNA:   3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 169238 0.71 0.459345
Target:  5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3'
miRNA:   3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 170169 0.71 0.459345
Target:  5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3'
miRNA:   3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 168306 0.71 0.459345
Target:  5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3'
miRNA:   3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 44313 0.71 0.459345
Target:  5'- aGUGGgggcuGGGGCCGuGGcAG-CCGGGGGCu -3'
miRNA:   3'- -UACCau---CCCUGGC-CC-UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 137403 0.71 0.459345
Target:  5'- -cGGgAGGGugCuGGGGUcCCGGGGACc -3'
miRNA:   3'- uaCCaUCCCugGcCCUCA-GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 27899 0.71 0.468362
Target:  5'- -cGGaGGGGACCGGGAG-CUGcucccacggccaAGGGCu -3'
miRNA:   3'- uaCCaUCCCUGGCCCUCaGGC------------UCCUG- -5'
28823 5' -60 NC_006146.1 + 33229 0.71 0.477469
Target:  5'- -cGGgauGGGGCUGGGGuUCCGGGGGu -3'
miRNA:   3'- uaCCau-CCCUGGCCCUcAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 153383 0.71 0.495008
Target:  5'- gAUGGUggccggauuguugAGGGugCcaaGGGAGUucCCGGGGGCg -3'
miRNA:   3'- -UACCA-------------UCCCugG---CCCUCA--GGCUCCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.