miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 3069 0.66 0.767357
Target:  5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3'
miRNA:   3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 124523 0.66 0.739425
Target:  5'- cUGGcgAGGGA-CGGGGGcCUGGGGGa -3'
miRNA:   3'- uACCa-UCCCUgGCCCUCaGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 88851 0.66 0.739425
Target:  5'- -aGGUAGGGaAUCGGcGGGgCCuGGGGCu -3'
miRNA:   3'- uaCCAUCCC-UGGCC-CUCaGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 89403 0.66 0.739425
Target:  5'- gAUGG-GGGGAUgGaGGAGUuuGAGGcCu -3'
miRNA:   3'- -UACCaUCCCUGgC-CCUCAggCUCCuG- -5'
28823 5' -60 NC_006146.1 + 150284 0.66 0.758148
Target:  5'- aGUGGUAGGuGcccCCGGuGAGcCUGaAGGACu -3'
miRNA:   3'- -UACCAUCC-Cu--GGCC-CUCaGGC-UCCUG- -5'
28823 5' -60 NC_006146.1 + 33318 0.66 0.767357
Target:  5'- -cGGUccuGGGGcuCCGGG-GUCCGggugcuccGGGGCa -3'
miRNA:   3'- uaCCA---UCCCu-GGCCCuCAGGC--------UCCUG- -5'
28823 5' -60 NC_006146.1 + 44019 0.66 0.767357
Target:  5'- -cGGcGGGGA--GGGGGcggCCGAGGGCc -3'
miRNA:   3'- uaCCaUCCCUggCCCUCa--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 101252 0.66 0.776453
Target:  5'- uAUGGUgGGGGACauGGuG-CUGGGGGCa -3'
miRNA:   3'- -UACCA-UCCCUGgcCCuCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 49474 0.66 0.776453
Target:  5'- gAUGGUGaGGGCCGcGGuGUCgGccaGGGGCg -3'
miRNA:   3'- -UACCAUcCCUGGC-CCuCAGgC---UCCUG- -5'
28823 5' -60 NC_006146.1 + 51582 0.66 0.748835
Target:  5'- -cGGgAGGGGcCCGGGGGagCCaGAGGGg -3'
miRNA:   3'- uaCCaUCCCU-GGCCCUCa-GG-CUCCUg -5'
28823 5' -60 NC_006146.1 + 142424 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 145502 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 2137 0.66 0.767357
Target:  5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3'
miRNA:   3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 1205 0.66 0.767357
Target:  5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3'
miRNA:   3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 274 0.66 0.767357
Target:  5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3'
miRNA:   3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 105189 0.66 0.758148
Target:  5'- aGUGaccGGGGCCgGGGAG-CCGGGGGu -3'
miRNA:   3'- -UACcauCCCUGG-CCCUCaGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 157813 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 154735 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 151658 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 148580 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.