miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 170429 0.69 0.592306
Target:  5'- -gGGUcccgcGGGGcccggcgcguGCCGGGGGacCCGGGGGCg -3'
miRNA:   3'- uaCCA-----UCCC----------UGGCCCUCa-GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 170210 0.71 0.49594
Target:  5'- cUGGcGGGGGCCagcgcGGGGUCCcGGGGCg -3'
miRNA:   3'- uACCaUCCCUGGc----CCUCAGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 170169 0.71 0.459345
Target:  5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3'
miRNA:   3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 169737 0.68 0.66168
Target:  5'- -cGGcgcgGGGGAgccCCGGGgcGGcCCGGGGACc -3'
miRNA:   3'- uaCCa---UCCCU---GGCCC--UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 169498 0.69 0.592306
Target:  5'- -gGGUcccgcGGGGcccggcgcguGCCGGGGGacCCGGGGGCg -3'
miRNA:   3'- uaCCA-----UCCC----------UGGCCCUCa-GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 169279 0.71 0.49594
Target:  5'- cUGGcGGGGGCCagcgcGGGGUCCcGGGGCg -3'
miRNA:   3'- uACCaUCCCUGGc----CCUCAGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 169238 0.71 0.459345
Target:  5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3'
miRNA:   3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 168805 0.68 0.66168
Target:  5'- -cGGcgcgGGGGAgccCCGGGgcGGcCCGGGGACc -3'
miRNA:   3'- uaCCa---UCCCU---GGCCC--UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 168566 0.69 0.592306
Target:  5'- -gGGUcccgcGGGGcccggcgcguGCCGGGGGacCCGGGGGCg -3'
miRNA:   3'- uaCCA-----UCCC----------UGGCCCUCa-GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 168347 0.71 0.49594
Target:  5'- cUGGcGGGGGCCagcgcGGGGUCCcGGGGCg -3'
miRNA:   3'- uACCaUCCCUGGc----CCUCAGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 168306 0.71 0.459345
Target:  5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3'
miRNA:   3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 167873 0.68 0.66168
Target:  5'- -cGGcgcgGGGGAgccCCGGGgcGGcCCGGGGACc -3'
miRNA:   3'- uaCCa---UCCCU---GGCCC--UCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 167634 0.73 0.366848
Target:  5'- -gGGUcccgcGGGGcccggcgcguGCCGGGGGcCCGGGGGCg -3'
miRNA:   3'- uaCCA-----UCCC----------UGGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 167415 0.71 0.49594
Target:  5'- cUGGcGGGGGCCagcgcGGGGUCCcGGGGCg -3'
miRNA:   3'- uACCaUCCCUGGc----CCUCAGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 167374 0.71 0.459345
Target:  5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3'
miRNA:   3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 166768 0.69 0.582451
Target:  5'- aGUGGcgaGGGGACCaggagGGGAGUuuGAaaaGGGCa -3'
miRNA:   3'- -UACCa--UCCCUGG-----CCCUCAggCU---CCUG- -5'
28823 5' -60 NC_006146.1 + 157813 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 157750 0.67 0.729927
Target:  5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 157525 0.69 0.602189
Target:  5'- cUGGacUAGGGGCCcuGGGcc-CCGAGGGCg -3'
miRNA:   3'- uACC--AUCCCUGG--CCCucaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 157093 0.68 0.67156
Target:  5'- -cGGUGGGGagacaaGCUGaGGGGggCCGGGGAg -3'
miRNA:   3'- uaCCAUCCC------UGGC-CCUCa-GGCUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.