miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 156835 0.68 0.651777
Target:  5'- -gGGUGGGGagugGCCaGGGAGgaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCa-GgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 156523 0.68 0.67156
Target:  5'- -cGGaGGGGAgCGGGAGgcgagaUCCcGGGACc -3'
miRNA:   3'- uaCCaUCCCUgGCCCUC------AGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 154735 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 154673 0.73 0.374712
Target:  5'- -gGGUcuuGGGcCUGGGAGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCUCAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 154560 0.68 0.631934
Target:  5'- -cGGacgAGGGACauuGGAuGUCCGAGGAg -3'
miRNA:   3'- uaCCa--UCCCUGgc-CCU-CAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 154447 0.69 0.602189
Target:  5'- cUGGacUAGGGGCCcuGGGcc-CCGAGGGCg -3'
miRNA:   3'- uACC--AUCCCUGG--CCCucaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 154015 0.68 0.67156
Target:  5'- -cGGUGGGGagacaaGCUGaGGGGggCCGGGGAg -3'
miRNA:   3'- uaCCAUCCC------UGGC-CCUCa-GGCUCCUg -5'
28823 5' -60 NC_006146.1 + 153757 0.68 0.651777
Target:  5'- -gGGUGGGGagugGCCaGGGAGgaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCa-GgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 153383 0.71 0.495008
Target:  5'- gAUGGUggccggauuguugAGGGugCcaaGGGAGUucCCGGGGGCg -3'
miRNA:   3'- -UACCA-------------UCCCugG---CCCUCA--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 151658 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 151595 0.67 0.729927
Target:  5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 151369 0.69 0.602189
Target:  5'- cUGGacUAGGGGCCcuGGGcc-CCGAGGGCg -3'
miRNA:   3'- uACC--AUCCCUGG--CCCucaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 150937 0.68 0.67156
Target:  5'- -cGGUGGGGagacaaGCUGaGGGGggCCGGGGAg -3'
miRNA:   3'- uaCCAUCCC------UGGC-CCUCa-GGCUCCUg -5'
28823 5' -60 NC_006146.1 + 150680 0.69 0.572629
Target:  5'- -gGGUGGGGagugGCCaGGGGGaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCaGgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 150284 0.66 0.758148
Target:  5'- aGUGGUAGGuGcccCCGGuGAGcCUGaAGGACu -3'
miRNA:   3'- -UACCAUCC-Cu--GGCC-CUCaGGC-UCCUG- -5'
28823 5' -60 NC_006146.1 + 148580 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 148517 0.67 0.729927
Target:  5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 148291 0.69 0.602189
Target:  5'- cUGGacUAGGGGCCcuGGGcc-CCGAGGGCg -3'
miRNA:   3'- uACC--AUCCCUGG--CCCucaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 147859 0.68 0.67156
Target:  5'- -cGGUGGGGagacaaGCUGaGGGGggCCGGGGAg -3'
miRNA:   3'- uaCCAUCCC------UGGC-CCUCa-GGCUCCUg -5'
28823 5' -60 NC_006146.1 + 147602 0.68 0.651777
Target:  5'- -gGGUGGGGagugGCCaGGGAGgaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCa-GgCUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.