miRNA display CGI


Results 21 - 40 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 137403 0.71 0.459345
Target:  5'- -cGGgAGGGugCuGGGGUcCCGGGGACc -3'
miRNA:   3'- uaCCaUCCCugGcCCUCA-GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 33229 0.71 0.477469
Target:  5'- -cGGgauGGGGCUGGGGuUCCGGGGGu -3'
miRNA:   3'- uaCCau-CCCUGGCCCUcAGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 27899 0.71 0.468362
Target:  5'- -cGGaGGGGACCGGGAG-CUGcucccacggccaAGGGCu -3'
miRNA:   3'- uaCCaUCCCUGGCCCUCaGGC------------UCCUG- -5'
28823 5' -60 NC_006146.1 + 170169 0.71 0.459345
Target:  5'- -cGGccGGGGGCUGaGGGGgcucCCGAGGGCg -3'
miRNA:   3'- uaCCa-UCCCUGGC-CCUCa---GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 45078 0.7 0.505296
Target:  5'- -cGGUc-GGACUGcGAGUCUGAGGACg -3'
miRNA:   3'- uaCCAucCCUGGCcCUCAGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 142135 0.69 0.602189
Target:  5'- cUGGacUAGGGGCCcuGGGcc-CCGAGGGCg -3'
miRNA:   3'- uACC--AUCCCUGG--CCCucaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 145213 0.69 0.602189
Target:  5'- cUGGacUAGGGGCCcuGGGcc-CCGAGGGCg -3'
miRNA:   3'- uACC--AUCCCUGG--CCCucaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 151369 0.69 0.602189
Target:  5'- cUGGacUAGGGGCCcuGGGcc-CCGAGGGCg -3'
miRNA:   3'- uACC--AUCCCUGG--CCCucaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 154447 0.69 0.602189
Target:  5'- cUGGacUAGGGGCCcuGGGcc-CCGAGGGCg -3'
miRNA:   3'- uACC--AUCCCUGG--CCCucaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 157525 0.69 0.602189
Target:  5'- cUGGacUAGGGGCCcuGGGcc-CCGAGGGCg -3'
miRNA:   3'- uACC--AUCCCUGG--CCCucaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 150680 0.69 0.572629
Target:  5'- -gGGUGGGGagugGCCaGGGGGaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCaGgCUCCUG- -5'
28823 5' -60 NC_006146.1 + 148291 0.69 0.602189
Target:  5'- cUGGacUAGGGGCCcuGGGcc-CCGAGGGCg -3'
miRNA:   3'- uACC--AUCCCUGG--CCCucaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 14842 0.69 0.592306
Target:  5'- -cGGgcccGGGGCCgcGGGAGgCCGAGGGg -3'
miRNA:   3'- uaCCau--CCCUGG--CCCUCaGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 170429 0.69 0.592306
Target:  5'- -gGGUcccgcGGGGcccggcgcguGCCGGGGGacCCGGGGGCg -3'
miRNA:   3'- uaCCA-----UCCC----------UGGCCCUCa-GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 169498 0.69 0.592306
Target:  5'- -gGGUcccgcGGGGcccggcgcguGCCGGGGGacCCGGGGGCg -3'
miRNA:   3'- uaCCA-----UCCC----------UGGCCCUCa-GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 168566 0.69 0.592306
Target:  5'- -gGGUcccgcGGGGcccggcgcguGCCGGGGGacCCGGGGGCg -3'
miRNA:   3'- uaCCA-----UCCC----------UGGCCCUCa-GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 166768 0.69 0.582451
Target:  5'- aGUGGcgaGGGGACCaggagGGGAGUuuGAaaaGGGCa -3'
miRNA:   3'- -UACCa--UCCCUGG-----CCCUCAggCU---CCUG- -5'
28823 5' -60 NC_006146.1 + 45526 0.69 0.582451
Target:  5'- -cGGUGGGGGCCuGGGccUCCuuGGGCu -3'
miRNA:   3'- uaCCAUCCCUGG-CCCucAGGcuCCUG- -5'
28823 5' -60 NC_006146.1 + 23973 0.69 0.592306
Target:  5'- -gGGUGGGGgaGCCGGaGAGggggCgaaaGAGGACg -3'
miRNA:   3'- uaCCAUCCC--UGGCC-CUCa---Gg---CUCCUG- -5'
28823 5' -60 NC_006146.1 + 144524 0.68 0.651777
Target:  5'- -gGGUGGGGagugGCCaGGGAGgaCgGAGGGCc -3'
miRNA:   3'- uaCCAUCCC----UGG-CCCUCa-GgCUCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.