miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 136290 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 135918 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136847 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 137033 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 137126 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 137219 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 137312 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136940 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136476 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136383 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136104 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136197 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 135825 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 136011 0.67 0.691223
Target:  5'- cUGGagcucGGGGCCGGGGG-CCGGGuGCc -3'
miRNA:   3'- uACCau---CCCUGGCCCUCaGGCUCcUG- -5'
28823 5' -60 NC_006146.1 + 13935 0.67 0.681411
Target:  5'- -gGGU-GGGcCCGGGGGagCCcAGGACa -3'
miRNA:   3'- uaCCAuCCCuGGCCCUCa-GGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 43597 0.67 0.681411
Target:  5'- -gGGgcGGGagGCCGGGucgGGUCgGGGGAa -3'
miRNA:   3'- uaCCauCCC--UGGCCC---UCAGgCUCCUg -5'
28823 5' -60 NC_006146.1 + 49521 0.67 0.681411
Target:  5'- -cGGcGGGuGAuCCGGGGGcuccUCUGGGGGCg -3'
miRNA:   3'- uaCCaUCC-CU-GGCCCUC----AGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 147859 0.68 0.67156
Target:  5'- -cGGUGGGGagacaaGCUGaGGGGggCCGGGGAg -3'
miRNA:   3'- uaCCAUCCC------UGGC-CCUCa-GGCUCCUg -5'
28823 5' -60 NC_006146.1 + 150937 0.68 0.67156
Target:  5'- -cGGUGGGGagacaaGCUGaGGGGggCCGGGGAg -3'
miRNA:   3'- uaCCAUCCC------UGGC-CCUCa-GGCUCCUg -5'
28823 5' -60 NC_006146.1 + 157093 0.68 0.67156
Target:  5'- -cGGUGGGGagacaaGCUGaGGGGggCCGGGGAg -3'
miRNA:   3'- uaCCAUCCC------UGGC-CCUCa-GGCUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.