miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28827 3' -53.5 NC_006146.1 + 9771 0.68 0.92112
Target:  5'- -aUCCUGG--UGCAUGCGCC-CAAUGa -3'
miRNA:   3'- cgAGGACCcuAUGUGCGUGGaGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 15572 0.74 0.666278
Target:  5'- gGUcCCUGGGAggACAgGCGCgUCGGCGa -3'
miRNA:   3'- -CGaGGACCCUa-UGUgCGUGgAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 39687 0.67 0.950408
Target:  5'- gGCUCCUGGGccUGCA-GCGCCgCucCGg -3'
miRNA:   3'- -CGAGGACCCu-AUGUgCGUGGaGuuGC- -5'
28827 3' -53.5 NC_006146.1 + 39803 0.67 0.961524
Target:  5'- gGCUUCUGGGAcgGCGgcCGUugacggcccggcgGCCUCGGCc -3'
miRNA:   3'- -CGAGGACCCUa-UGU--GCG-------------UGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 42082 0.66 0.979012
Target:  5'- uGCUCCUGGac--CGCGCcguCCUUcGCGg -3'
miRNA:   3'- -CGAGGACCcuauGUGCGu--GGAGuUGC- -5'
28827 3' -53.5 NC_006146.1 + 43405 0.77 0.513926
Target:  5'- aGCUgCUUGGGAaACACGCGCCgcugCAugGc -3'
miRNA:   3'- -CGA-GGACCCUaUGUGCGUGGa---GUugC- -5'
28827 3' -53.5 NC_006146.1 + 44428 0.67 0.958279
Target:  5'- gGCUCCcGGGGU-CugGCACC-CGu-- -3'
miRNA:   3'- -CGAGGaCCCUAuGugCGUGGaGUugc -5'
28827 3' -53.5 NC_006146.1 + 44883 0.66 0.968407
Target:  5'- aGCcCCUGGGcucGCGaugGUACCUUGACGg -3'
miRNA:   3'- -CGaGGACCCua-UGUg--CGUGGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 45057 0.67 0.958279
Target:  5'- gGCUCCcuagGGGcgGCugAgGUGCCUCGugGg -3'
miRNA:   3'- -CGAGGa---CCCuaUG--UgCGUGGAGUugC- -5'
28827 3' -53.5 NC_006146.1 + 46390 0.7 0.868744
Target:  5'- uGCUgUgugagagGGGGUugGCuaGCCUCAGCGa -3'
miRNA:   3'- -CGAgGa------CCCUAugUGcgUGGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 56568 0.66 0.968407
Target:  5'- aCUCCagggUGGuGAUGCAgGCGCCUgGggauGCGg -3'
miRNA:   3'- cGAGG----ACC-CUAUGUgCGUGGAgU----UGC- -5'
28827 3' -53.5 NC_006146.1 + 63003 0.68 0.931844
Target:  5'- gGCUCC-GGGAgucugGCGgGUGCC-CGACGu -3'
miRNA:   3'- -CGAGGaCCCUa----UGUgCGUGGaGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 63129 0.74 0.685681
Target:  5'- uGCcCCUGGGAccUGCugGCcaucuccGCCUCGACc -3'
miRNA:   3'- -CGaGGACCCU--AUGugCG-------UGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 71528 0.7 0.87609
Target:  5'- cGCUCCUGGGccucaACGCGCgGCCcgGGCGc -3'
miRNA:   3'- -CGAGGACCCua---UGUGCG-UGGagUUGC- -5'
28827 3' -53.5 NC_006146.1 + 76524 0.74 0.696844
Target:  5'- gGCUCCagaaGAacUACGCGCGCCUCGGCa -3'
miRNA:   3'- -CGAGGacc-CU--AUGUGCGUGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 77249 1.11 0.004308
Target:  5'- cGCUCCUGGGAUACACGCACCUCAACGu -3'
miRNA:   3'- -CGAGGACCCUAUGUGCGUGGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 82072 0.71 0.828913
Target:  5'- --aCCUGGGAUACAgGgaGCCUCAGg- -3'
miRNA:   3'- cgaGGACCCUAUGUgCg-UGGAGUUgc -5'
28827 3' -53.5 NC_006146.1 + 85817 0.67 0.958279
Target:  5'- -aUCaCUGGGGaGCugGUGCCUUGGCu -3'
miRNA:   3'- cgAG-GACCCUaUGugCGUGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 89205 0.75 0.62517
Target:  5'- gGCUCCUGGGGUuUugGUuCCUCAuCGu -3'
miRNA:   3'- -CGAGGACCCUAuGugCGuGGAGUuGC- -5'
28827 3' -53.5 NC_006146.1 + 89706 0.66 0.976651
Target:  5'- --gCCUGGGAUACACGgguccggGCCUUGAa- -3'
miRNA:   3'- cgaGGACCCUAUGUGCg------UGGAGUUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.