miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28827 3' -53.5 NC_006146.1 + 63129 0.74 0.685681
Target:  5'- uGCcCCUGGGAccUGCugGCcaucuccGCCUCGACc -3'
miRNA:   3'- -CGaGGACCCU--AUGugCG-------UGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 146034 0.67 0.965248
Target:  5'- aGCUCCUGGcacUGCGCGUccaGCUgCAGCa -3'
miRNA:   3'- -CGAGGACCcu-AUGUGCG---UGGaGUUGc -5'
28827 3' -53.5 NC_006146.1 + 158058 0.67 0.954458
Target:  5'- uGUUCCUGGGGcACAgcaucaGCACCUUgGACa -3'
miRNA:   3'- -CGAGGACCCUaUGUg-----CGUGGAG-UUGc -5'
28827 3' -53.5 NC_006146.1 + 63003 0.68 0.931844
Target:  5'- gGCUCC-GGGAgucugGCGgGUGCC-CGACGu -3'
miRNA:   3'- -CGAGGaCCCUa----UGUgCGUGGaGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 151110 0.7 0.87609
Target:  5'- aGCUCCgagGGGA-ACuCGUagACCUCAACc -3'
miRNA:   3'- -CGAGGa--CCCUaUGuGCG--UGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 82072 0.71 0.828913
Target:  5'- --aCCUGGGAUACAgGgaGCCUCAGg- -3'
miRNA:   3'- cgaGGACCCUAUGUgCg-UGGAGUUgc -5'
28827 3' -53.5 NC_006146.1 + 149825 0.66 0.976651
Target:  5'- gGCUCCggguggugUGGGcgGC-CaGgGCCUCGGCGa -3'
miRNA:   3'- -CGAGG--------ACCCuaUGuG-CgUGGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 121147 0.66 0.976651
Target:  5'- gGCgucugggCCUGGGccGCGCGCcCCUgaAACGa -3'
miRNA:   3'- -CGa------GGACCCuaUGUGCGuGGAg-UUGC- -5'
28827 3' -53.5 NC_006146.1 + 156724 0.66 0.968407
Target:  5'- gGCUCCgGGGGUccagcCugGCGCagacgCUCAGCu -3'
miRNA:   3'- -CGAGGaCCCUAu----GugCGUG-----GAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 44428 0.67 0.958279
Target:  5'- gGCUCCcGGGGU-CugGCACC-CGu-- -3'
miRNA:   3'- -CGAGGaCCCUAuGugCGUGGaGUugc -5'
28827 3' -53.5 NC_006146.1 + 100667 0.7 0.883217
Target:  5'- --aCCUGGGGUACcccUGCuACUUCAACGc -3'
miRNA:   3'- cgaGGACCCUAUGu--GCG-UGGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 156610 0.72 0.753353
Target:  5'- aGCUCCaGGGAcagggcgcUGCACGCgcggucauucugucGCCUCAaACGg -3'
miRNA:   3'- -CGAGGaCCCU--------AUGUGCG--------------UGGAGU-UGC- -5'
28827 3' -53.5 NC_006146.1 + 161131 0.66 0.968407
Target:  5'- cGCUCaUUGGGc-GCAUGCACCagGAUGu -3'
miRNA:   3'- -CGAG-GACCCuaUGUGCGUGGagUUGC- -5'
28827 3' -53.5 NC_006146.1 + 99208 0.71 0.820375
Target:  5'- cCUCCaGGGAgGC-CGCGgCCUCGGCGc -3'
miRNA:   3'- cGAGGaCCCUaUGuGCGU-GGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 45057 0.67 0.958279
Target:  5'- gGCUCCcuagGGGcgGCugAgGUGCCUCGugGg -3'
miRNA:   3'- -CGAGGa---CCCuaUG--UgCGUGGAGUugC- -5'
28827 3' -53.5 NC_006146.1 + 89706 0.66 0.976651
Target:  5'- --gCCUGGGAUACACGgguccggGCCUUGAa- -3'
miRNA:   3'- cgaGGACCCUAUGUGCg------UGGAGUUgc -5'
28827 3' -53.5 NC_006146.1 + 129916 0.71 0.820375
Target:  5'- cGC-CCUGGGGcgccgGCGCgGCACCaCGGCGg -3'
miRNA:   3'- -CGaGGACCCUa----UGUG-CGUGGaGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 44883 0.66 0.968407
Target:  5'- aGCcCCUGGGcucGCGaugGUACCUUGACGg -3'
miRNA:   3'- -CGaGGACCCua-UGUg--CGUGGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 108721 0.7 0.87609
Target:  5'- gGCUCCgUGGGcGUGCugGUguccGCCUCcuCGg -3'
miRNA:   3'- -CGAGG-ACCC-UAUGugCG----UGGAGuuGC- -5'
28827 3' -53.5 NC_006146.1 + 71528 0.7 0.87609
Target:  5'- cGCUCCUGGGccucaACGCGCgGCCcgGGCGc -3'
miRNA:   3'- -CGAGGACCCua---UGUGCG-UGGagUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.