miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 5' -53.8 NC_006146.1 + 49424 0.67 0.946252
Target:  5'- gCGGCCcccACGAugGACCCGGcGUUGGCGAu -3'
miRNA:   3'- aGUCGG---UGCU--CUGGGUC-CAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 50357 0.72 0.755443
Target:  5'- cCAGCCugGGGAUCUuGGcCAGCAGu -3'
miRNA:   3'- aGUCGGugCUCUGGGuCCaGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 51215 0.69 0.875926
Target:  5'- gCAuCCACGAGGCCgGGGU-GGCGGGu -3'
miRNA:   3'- aGUcGGUGCUCUGGgUCCAgUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 52264 0.7 0.845116
Target:  5'- aCGGCCG-GAGACCCAGcaagCAGCGGa -3'
miRNA:   3'- aGUCGGUgCUCUGGGUCca--GUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 52372 0.67 0.941719
Target:  5'- aCAGCaucccCGAGACCCcGGUCGAg--- -3'
miRNA:   3'- aGUCGgu---GCUCUGGGuCCAGUUguuc -5'
28829 5' -53.8 NC_006146.1 + 53672 0.66 0.968269
Target:  5'- cCGGCCGCuuuccagGAaGCCCGGGggCAGCAGu -3'
miRNA:   3'- aGUCGGUG-------CUcUGGGUCCa-GUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 54733 0.7 0.836904
Target:  5'- gCGGCCGagggGAGACUCAGGUCGcuGCcgAAGg -3'
miRNA:   3'- aGUCGGUg---CUCUGGGUCCAGU--UG--UUC- -5'
28829 5' -53.8 NC_006146.1 + 55161 0.71 0.793155
Target:  5'- gUCAGCCGCcggGAGGCCaGGGUgGACGc- -3'
miRNA:   3'- -AGUCGGUG---CUCUGGgUCCAgUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 55763 0.68 0.926667
Target:  5'- cCGGCgGCGGG--CCAGGggCAGCGAGg -3'
miRNA:   3'- aGUCGgUGCUCugGGUCCa-GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 56191 0.78 0.409547
Target:  5'- cUCGGCCGCcaGGGCCCGGGUCucgcgGACGAGc -3'
miRNA:   3'- -AGUCGGUGc-UCUGGGUCCAG-----UUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 57242 0.77 0.454644
Target:  5'- -uGGuCCACG-GGCCCGuGGUCAGCAAGg -3'
miRNA:   3'- agUC-GGUGCuCUGGGU-CCAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 64717 0.77 0.463983
Target:  5'- -aGGCC-CGGGACCCGuGUCAGCAGGc -3'
miRNA:   3'- agUCGGuGCUCUGGGUcCAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 66208 0.69 0.883088
Target:  5'- -aGGCgACGAGAUCCAGGccCAGCu-- -3'
miRNA:   3'- agUCGgUGCUCUGGGUCCa-GUUGuuc -5'
28829 5' -53.8 NC_006146.1 + 69866 0.69 0.868542
Target:  5'- gUCGGgCguaGAGGCCCAGGUCcACGGc -3'
miRNA:   3'- -AGUCgGug-CUCUGGGUCCAGuUGUUc -5'
28829 5' -53.8 NC_006146.1 + 70011 0.79 0.367342
Target:  5'- aCGGCC--GAGACCCAGGcCGACAGGu -3'
miRNA:   3'- aGUCGGugCUCUGGGUCCaGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 72171 0.71 0.774559
Target:  5'- -aGGCC--GAGAUgCGGGUCGACGAGg -3'
miRNA:   3'- agUCGGugCUCUGgGUCCAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 76037 1.1 0.004433
Target:  5'- uUCAGCCACGAGACCCAGGUCAACAAGa -3'
miRNA:   3'- -AGUCGGUGCUCUGGGUCCAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 82370 0.7 0.860942
Target:  5'- gCAGCCaucGCGGGcuccacACCCGGGUU-ACAGGg -3'
miRNA:   3'- aGUCGG---UGCUC------UGGGUCCAGuUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 83898 0.67 0.954607
Target:  5'- cUAGCCAUGAGGCCUaaaaAGGaCGGCc-- -3'
miRNA:   3'- aGUCGGUGCUCUGGG----UCCaGUUGuuc -5'
28829 5' -53.8 NC_006146.1 + 90239 0.68 0.909425
Target:  5'- gCAGCCGagggaGAGGCCgAGGUaGAgGAGg -3'
miRNA:   3'- aGUCGGUg----CUCUGGgUCCAgUUgUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.