miRNA display CGI


Results 21 - 40 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 5' -53.8 NC_006146.1 + 23790 0.66 0.958435
Target:  5'- gCGGCC-CuGGACCCAGGa-AACGGGu -3'
miRNA:   3'- aGUCGGuGcUCUGGGUCCagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 25057 0.66 0.965414
Target:  5'- cCAGCC-CaGAGGCCCgAGGUuggagcCGGCGGGc -3'
miRNA:   3'- aGUCGGuG-CUCUGGG-UCCA------GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 26204 0.71 0.783926
Target:  5'- gCGGCCugG-GAaccaagaCCAGGUCGugGAGa -3'
miRNA:   3'- aGUCGGugCuCUg------GGUCCAGUugUUC- -5'
28829 5' -53.8 NC_006146.1 + 26868 0.66 0.958435
Target:  5'- gCGGCC-CuGGACCCAGGa-AACGGGu -3'
miRNA:   3'- aGUCGGuGcUCUGGGUCCagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 28135 0.66 0.965414
Target:  5'- cCAGCC-CaGAGGCCCgAGGUuggagcCGGCGGGc -3'
miRNA:   3'- aGUCGGuG-CUCUGGG-UCCA------GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 30983 0.66 0.962036
Target:  5'- aUguGCCAUG-GACCCAGGaUCGcccauGCAu- -3'
miRNA:   3'- -AguCGGUGCuCUGGGUCC-AGU-----UGUuc -5'
28829 5' -53.8 NC_006146.1 + 32024 0.68 0.926667
Target:  5'- -gGGCCucgggACGAGgcgcugGCCCAGGUCAugAc- -3'
miRNA:   3'- agUCGG-----UGCUC------UGGGUCCAGUugUuc -5'
28829 5' -53.8 NC_006146.1 + 33033 0.67 0.946252
Target:  5'- cCGGCCcgggGCGGGGCCCGGGaCAc---- -3'
miRNA:   3'- aGUCGG----UGCUCUGGGUCCaGUuguuc -5'
28829 5' -53.8 NC_006146.1 + 40309 0.66 0.958435
Target:  5'- aUAGCgGuCGGGGCCUcggugGGGuUCAACGAGa -3'
miRNA:   3'- aGUCGgU-GCUCUGGG-----UCC-AGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 40713 0.66 0.971525
Target:  5'- -gAGCCcuCGGGuCUCAGGUCcgGGCAGGc -3'
miRNA:   3'- agUCGGu-GCUCuGGGUCCAG--UUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 41093 0.66 0.971525
Target:  5'- aCAGCgAgGGGAgCCAGGcguGCAGGg -3'
miRNA:   3'- aGUCGgUgCUCUgGGUCCaguUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 42731 0.66 0.962036
Target:  5'- gCAGCCGCG-GAUCCGGG-CggUg-- -3'
miRNA:   3'- aGUCGGUGCuCUGGGUCCaGuuGuuc -5'
28829 5' -53.8 NC_006146.1 + 43329 0.67 0.941719
Target:  5'- gCGGCCuCGGccGCCCAGGgcCAGCAGGc -3'
miRNA:   3'- aGUCGGuGCUc-UGGGUCCa-GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 43504 0.66 0.958435
Target:  5'- cCGGCgGCGGGGCCCAGccccaaGACAc- -3'
miRNA:   3'- aGUCGgUGCUCUGGGUCcag---UUGUuc -5'
28829 5' -53.8 NC_006146.1 + 44926 0.68 0.903194
Target:  5'- gCAGCCGCGAGugCgGaccCAGCAAGa -3'
miRNA:   3'- aGUCGGUGCUCugGgUccaGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 45727 0.67 0.946252
Target:  5'- -gGGCCACGAcccugaccuGGCCCAGaGUCuuCAc- -3'
miRNA:   3'- agUCGGUGCU---------CUGGGUC-CAGuuGUuc -5'
28829 5' -53.8 NC_006146.1 + 46038 0.71 0.819918
Target:  5'- -aGGCgACGGGGCCCuccaGGGgacgCAGCGAGu -3'
miRNA:   3'- agUCGgUGCUCUGGG----UCCa---GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 47226 0.68 0.915415
Target:  5'- cUCcGCCACGAucuugagcuGGCgCGGGUCGACGu- -3'
miRNA:   3'- -AGuCGGUGCU---------CUGgGUCCAGUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 47525 0.67 0.950547
Target:  5'- cCAGCCagguuGCGGGGCCCccGGcCAGCGc- -3'
miRNA:   3'- aGUCGG-----UGCUCUGGGu-CCaGUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 49067 0.78 0.445407
Target:  5'- aCAGCCAgGAGACCCGGG--AGCAGa -3'
miRNA:   3'- aGUCGGUgCUCUGGGUCCagUUGUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.