miRNA display CGI


Results 21 - 40 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 5' -53.8 NC_006146.1 + 147150 0.68 0.921162
Target:  5'- cUCGGCCGCGGcaguuGACCCGGcGgCGGCGcAGa -3'
miRNA:   3'- -AGUCGGUGCU-----CUGGGUC-CaGUUGU-UC- -5'
28829 5' -53.8 NC_006146.1 + 90239 0.68 0.909425
Target:  5'- gCAGCCGagggaGAGGCCgAGGUaGAgGAGg -3'
miRNA:   3'- aGUCGGUg----CUCUGGgUCCAgUUgUUC- -5'
28829 5' -53.8 NC_006146.1 + 161265 0.7 0.828502
Target:  5'- cUguGCCGCaugcgccuggggGAGACCgAGGUCAcgaaGCAGGa -3'
miRNA:   3'- -AguCGGUG------------CUCUGGgUCCAGU----UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 57242 0.77 0.454644
Target:  5'- -uGGuCCACG-GGCCCGuGGUCAGCAAGg -3'
miRNA:   3'- agUC-GGUGCuCUGGGU-CCAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 101589 0.67 0.950547
Target:  5'- -gAGCCaacgACGAGGCCCAG---AACGAGg -3'
miRNA:   3'- agUCGG----UGCUCUGGGUCcagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 158880 0.67 0.935464
Target:  5'- --cGCCACGuagcugccggucucGGGCaCCGGaGUCAGCGAGc -3'
miRNA:   3'- aguCGGUGC--------------UCUG-GGUC-CAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 117248 0.68 0.903194
Target:  5'- gCGGCC--GGGGCCagggGGGUCGGCAGGu -3'
miRNA:   3'- aGUCGGugCUCUGGg---UCCAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 49067 0.78 0.445407
Target:  5'- aCAGCCAgGAGACCCGGG--AGCAGa -3'
miRNA:   3'- aGUCGGUgCUCUGGGUCCagUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 159281 0.68 0.931927
Target:  5'- -gGGCCuCGGGGCCCucgcaGUCGGCAAa -3'
miRNA:   3'- agUCGGuGCUCUGGGuc---CAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 92872 0.78 0.409547
Target:  5'- cUCGGCCACGAG-CCCAGGUaccuGCuAGg -3'
miRNA:   3'- -AGUCGGUGCUCuGGGUCCAgu--UGuUC- -5'
28829 5' -53.8 NC_006146.1 + 98948 0.68 0.903194
Target:  5'- --cGCCACGAaGCCCAGGacaaacucgUCGGCAu- -3'
miRNA:   3'- aguCGGUGCUcUGGGUCC---------AGUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 98980 0.68 0.926667
Target:  5'- -aGGcCCAgGucAGGCCCAGGUCAgaggccgcgcGCAGGa -3'
miRNA:   3'- agUC-GGUgC--UCUGGGUCCAGU----------UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 121917 0.69 0.875926
Target:  5'- cCAGCCu-----CCCAGGUCAGCAAc -3'
miRNA:   3'- aGUCGGugcucuGGGUCCAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 54733 0.7 0.836904
Target:  5'- gCGGCCGagggGAGACUCAGGUCGcuGCcgAAGg -3'
miRNA:   3'- aGUCGGUg---CUCUGGGUCCAGU--UG--UUC- -5'
28829 5' -53.8 NC_006146.1 + 147720 0.71 0.802236
Target:  5'- -aGGCgGCGGGGCCUGGGUaaUAGCGGGc -3'
miRNA:   3'- agUCGgUGCUCUGGGUCCA--GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 98480 0.76 0.531912
Target:  5'- gUCAGuCCGCG-GACCaAGGUCAGCAGa -3'
miRNA:   3'- -AGUC-GGUGCuCUGGgUCCAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 20712 0.66 0.958435
Target:  5'- gCGGCC-CuGGACCCAGGa-AACGGGu -3'
miRNA:   3'- aGUCGGuGcUCUGGGUCCagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 154253 0.66 0.958435
Target:  5'- -aGGCCGCugguGGGCCuCAGGUUGACGGu -3'
miRNA:   3'- agUCGGUGc---UCUGG-GUCCAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 45727 0.67 0.946252
Target:  5'- -gGGCCACGAcccugaccuGGCCCAGaGUCuuCAc- -3'
miRNA:   3'- agUCGGUGCU---------CUGGGUC-CAGuuGUuc -5'
28829 5' -53.8 NC_006146.1 + 158728 0.67 0.940311
Target:  5'- -gAGCC-CGAGGCCCccgagaucacguagGGGUCucuccgcuGCGAGg -3'
miRNA:   3'- agUCGGuGCUCUGGG--------------UCCAGu-------UGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.