miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 5' -53.8 NC_006146.1 + 56191 0.78 0.409547
Target:  5'- cUCGGCCGCcaGGGCCCGGGUCucgcgGACGAGc -3'
miRNA:   3'- -AGUCGGUGc-UCUGGGUCCAG-----UUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 117248 0.68 0.903194
Target:  5'- gCGGCC--GGGGCCagggGGGUCGGCAGGu -3'
miRNA:   3'- aGUCGGugCUCUGGg---UCCAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 90239 0.68 0.909425
Target:  5'- gCAGCCGagggaGAGGCCgAGGUaGAgGAGg -3'
miRNA:   3'- aGUCGGUg----CUCUGGgUCCAgUUgUUC- -5'
28829 5' -53.8 NC_006146.1 + 146801 0.66 0.971525
Target:  5'- cCAGCCGCccucGACCCGcGUCccaGGCGAGg -3'
miRNA:   3'- aGUCGGUGcu--CUGGGUcCAG---UUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 98480 0.76 0.531912
Target:  5'- gUCAGuCCGCG-GACCaAGGUCAGCAGa -3'
miRNA:   3'- -AGUC-GGUGCuCUGGgUCCAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 146637 0.72 0.725961
Target:  5'- -gGGUCACGAGGCCUGGGUCcauggucagaaAACAAc -3'
miRNA:   3'- agUCGGUGCUCUGGGUCCAG-----------UUGUUc -5'
28829 5' -53.8 NC_006146.1 + 147720 0.71 0.802236
Target:  5'- -aGGCgGCGGGGCCUGGGUaaUAGCGGGc -3'
miRNA:   3'- agUCGgUGCUCUGGGUCCA--GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 46038 0.71 0.819918
Target:  5'- -aGGCgACGGGGCCCuccaGGGgacgCAGCGAGu -3'
miRNA:   3'- agUCGgUGCUCUGGG----UCCa---GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 54733 0.7 0.836904
Target:  5'- gCGGCCGagggGAGACUCAGGUCGcuGCcgAAGg -3'
miRNA:   3'- aGUCGGUg---CUCUGGGUCCAGU--UG--UUC- -5'
28829 5' -53.8 NC_006146.1 + 131488 0.69 0.896726
Target:  5'- -gGGUCugGGGugCCAGGgaUCGACcGGg -3'
miRNA:   3'- agUCGGugCUCugGGUCC--AGUUGuUC- -5'
28829 5' -53.8 NC_006146.1 + 69866 0.69 0.868542
Target:  5'- gUCGGgCguaGAGGCCCAGGUCcACGGc -3'
miRNA:   3'- -AGUCgGug-CUCUGGGUCCAGuUGUUc -5'
28829 5' -53.8 NC_006146.1 + 161265 0.7 0.828502
Target:  5'- cUguGCCGCaugcgccuggggGAGACCgAGGUCAcgaaGCAGGa -3'
miRNA:   3'- -AguCGGUG------------CUCUGGgUCCAGU----UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 92872 0.78 0.409547
Target:  5'- cUCGGCCACGAG-CCCAGGUaccuGCuAGg -3'
miRNA:   3'- -AGUCGGUGCUCuGGGUCCAgu--UGuUC- -5'
28829 5' -53.8 NC_006146.1 + 121917 0.69 0.875926
Target:  5'- cCAGCCu-----CCCAGGUCAGCAAc -3'
miRNA:   3'- aGUCGGugcucuGGGUCCAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 49067 0.78 0.445407
Target:  5'- aCAGCCAgGAGACCCGGG--AGCAGa -3'
miRNA:   3'- aGUCGGUgCUCUGGGUCCagUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 99374 0.7 0.828502
Target:  5'- -gGGCCGCgcguuGAGGCCCAGG--AGCGAGu -3'
miRNA:   3'- agUCGGUG-----CUCUGGGUCCagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 66208 0.69 0.883088
Target:  5'- -aGGCgACGAGAUCCAGGccCAGCu-- -3'
miRNA:   3'- agUCGgUGCUCUGGGUCCa-GUUGuuc -5'
28829 5' -53.8 NC_006146.1 + 98948 0.68 0.903194
Target:  5'- --cGCCACGAaGCCCAGGacaaacucgUCGGCAu- -3'
miRNA:   3'- aguCGGUGCUcUGGGUCC---------AGUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 57242 0.77 0.454644
Target:  5'- -uGGuCCACG-GGCCCGuGGUCAGCAAGg -3'
miRNA:   3'- agUC-GGUGCuCUGGGU-CCAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 50357 0.72 0.755443
Target:  5'- cCAGCCugGGGAUCUuGGcCAGCAGu -3'
miRNA:   3'- aGUCGGugCUCUGGGuCCaGUUGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.