miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 5' -53.8 NC_006146.1 + 76037 1.1 0.004433
Target:  5'- uUCAGCCACGAGACCCAGGUCAACAAGa -3'
miRNA:   3'- -AGUCGGUGCUCUGGGUCCAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 70011 0.79 0.367342
Target:  5'- aCGGCC--GAGACCCAGGcCGACAGGu -3'
miRNA:   3'- aGUCGGugCUCUGGGUCCaGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 92872 0.78 0.409547
Target:  5'- cUCGGCCACGAG-CCCAGGUaccuGCuAGg -3'
miRNA:   3'- -AGUCGGUGCUCuGGGUCCAgu--UGuUC- -5'
28829 5' -53.8 NC_006146.1 + 56191 0.78 0.409547
Target:  5'- cUCGGCCGCcaGGGCCCGGGUCucgcgGACGAGc -3'
miRNA:   3'- -AGUCGGUGc-UCUGGGUCCAG-----UUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 49067 0.78 0.445407
Target:  5'- aCAGCCAgGAGACCCGGG--AGCAGa -3'
miRNA:   3'- aGUCGGUgCUCUGGGUCCagUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 57242 0.77 0.454644
Target:  5'- -uGGuCCACG-GGCCCGuGGUCAGCAAGg -3'
miRNA:   3'- agUC-GGUGCuCUGGGU-CCAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 64717 0.77 0.463983
Target:  5'- -aGGCC-CGGGACCCGuGUCAGCAGGc -3'
miRNA:   3'- agUCGGuGCUCUGGGUcCAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 98480 0.76 0.531912
Target:  5'- gUCAGuCCGCG-GACCaAGGUCAGCAGa -3'
miRNA:   3'- -AGUC-GGUGCuCUGGgUCCAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 13396 0.75 0.562135
Target:  5'- gCGGCCACG-GACugccucagCCAGGUCuGCAAGg -3'
miRNA:   3'- aGUCGGUGCuCUG--------GGUCCAGuUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 146637 0.72 0.725961
Target:  5'- -gGGUCACGAGGCCUGGGUCcauggucagaaAACAAc -3'
miRNA:   3'- agUCGGUGCUCUGGGUCCAG-----------UUGUUc -5'
28829 5' -53.8 NC_006146.1 + 117890 0.72 0.725961
Target:  5'- cCAGCCGCguGAGGCCCAGGgccaGAaGAGg -3'
miRNA:   3'- aGUCGGUG--CUCUGGGUCCag--UUgUUC- -5'
28829 5' -53.8 NC_006146.1 + 155481 0.72 0.755443
Target:  5'- -gGGCC-UGAGGCCCAGGg--GCGAGg -3'
miRNA:   3'- agUCGGuGCUCUGGGUCCaguUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 158560 0.72 0.755443
Target:  5'- -gGGCC-UGAGGCCCAGGg--GCGAGg -3'
miRNA:   3'- agUCGGuGCUCUGGGUCCaguUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 50357 0.72 0.755443
Target:  5'- cCAGCCugGGGAUCUuGGcCAGCAGu -3'
miRNA:   3'- aGUCGGugCUCUGGGuCCaGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 149325 0.72 0.755443
Target:  5'- -gGGCC-UGAGGCCCAGGg--GCGAGg -3'
miRNA:   3'- agUCGGuGCUCUGGGUCCaguUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 152403 0.72 0.755443
Target:  5'- -gGGCC-UGAGGCCCAGGg--GCGAGg -3'
miRNA:   3'- agUCGGuGCUCUGGGUCCaguUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 143169 0.72 0.755443
Target:  5'- -gGGCC-UGAGGCCCAGGg--GCGAGg -3'
miRNA:   3'- agUCGGuGCUCUGGGUCCaguUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 146247 0.72 0.755443
Target:  5'- -gGGCC-UGAGGCCCAGGg--GCGAGg -3'
miRNA:   3'- agUCGGuGCUCUGGGUCCaguUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 23459 0.72 0.755443
Target:  5'- cUCGGCCuACGAGGCCCuGGcCGugGc- -3'
miRNA:   3'- -AGUCGG-UGCUCUGGGuCCaGUugUuc -5'
28829 5' -53.8 NC_006146.1 + 72171 0.71 0.774559
Target:  5'- -aGGCC--GAGAUgCGGGUCGACGAGg -3'
miRNA:   3'- agUCGGugCUCUGgGUCCAGUUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.