miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 5' -53.8 NC_006146.1 + 157192 0.66 0.971525
Target:  5'- cCGGCCugGuGGACCCgagAGGcCGaaaGCGGGg -3'
miRNA:   3'- aGUCGGugC-UCUGGG---UCCaGU---UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 142091 0.66 0.971525
Target:  5'- -uGGCCugG-GACCCGGGgaGGCAc- -3'
miRNA:   3'- agUCGGugCuCUGGGUCCagUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 18259 0.66 0.968575
Target:  5'- aCAGCCugGGGAgCgUGGGUCAGg--- -3'
miRNA:   3'- aGUCGGugCUCU-GgGUCCAGUUguuc -5'
28829 5' -53.8 NC_006146.1 + 53672 0.66 0.968269
Target:  5'- cCGGCCGCuuuccagGAaGCCCGGGggCAGCAGu -3'
miRNA:   3'- aGUCGGUG-------CUcUGGGUCCa-GUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 116186 0.66 0.965414
Target:  5'- cUCGGCCGCccuGACCCGGGcCcGCc-- -3'
miRNA:   3'- -AGUCGGUGcu-CUGGGUCCaGuUGuuc -5'
28829 5' -53.8 NC_006146.1 + 11017 0.66 0.965414
Target:  5'- cCGGCCuCGAGGCCCucugCGAgGAGa -3'
miRNA:   3'- aGUCGGuGCUCUGGGuccaGUUgUUC- -5'
28829 5' -53.8 NC_006146.1 + 102998 0.66 0.965414
Target:  5'- uUCGGCuccCACGAGGCCCAGuUCGu---- -3'
miRNA:   3'- -AGUCG---GUGCUCUGGGUCcAGUuguuc -5'
28829 5' -53.8 NC_006146.1 + 30983 0.66 0.962036
Target:  5'- aUguGCCAUG-GACCCAGGaUCGcccauGCAu- -3'
miRNA:   3'- -AguCGGUGCuCUGGGUCC-AGU-----UGUuc -5'
28829 5' -53.8 NC_006146.1 + 123594 0.66 0.958435
Target:  5'- aUCAuCCAgGAGGCCCGGGagGagucccggcuGCAGGa -3'
miRNA:   3'- -AGUcGGUgCUCUGGGUCCagU----------UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 145169 0.66 0.971525
Target:  5'- -uGGCCugG-GACCCGGGgaGGCAc- -3'
miRNA:   3'- agUCGGugCuCUGGGUCCagUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 148247 0.66 0.971525
Target:  5'- -uGGCCugG-GACCCGGGgaGGCAc- -3'
miRNA:   3'- agUCGGugCuCUGGGUCCagUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 151325 0.66 0.971525
Target:  5'- -uGGCCugG-GACCCGGGgaGGCAc- -3'
miRNA:   3'- agUCGGugCuCUGGGUCCagUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 154114 0.66 0.971525
Target:  5'- cCGGCCugGuGGACCCgagAGGcCGaaaGCGGGg -3'
miRNA:   3'- aGUCGGugC-UCUGGG---UCCaGU---UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 151036 0.66 0.971525
Target:  5'- cCGGCCugGuGGACCCgagAGGcCGaaaGCGGGg -3'
miRNA:   3'- aGUCGGugC-UCUGGG---UCCaGU---UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 147958 0.66 0.971525
Target:  5'- cCGGCCugGuGGACCCgagAGGcCGaaaGCGGGg -3'
miRNA:   3'- aGUCGGugC-UCUGGG---UCCaGU---UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 144880 0.66 0.971525
Target:  5'- cCGGCCugGuGGACCCgagAGGcCGaaaGCGGGg -3'
miRNA:   3'- aGUCGGugC-UCUGGG---UCCaGU---UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 141802 0.66 0.971525
Target:  5'- cCGGCCugGuGGACCCgagAGGcCGaaaGCGGGg -3'
miRNA:   3'- aGUCGGugC-UCUGGG---UCCaGU---UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 41093 0.66 0.971525
Target:  5'- aCAGCgAgGGGAgCCAGGcguGCAGGg -3'
miRNA:   3'- aGUCGgUgCUCUgGGUCCaguUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 157481 0.66 0.971525
Target:  5'- -uGGCCugG-GACCCGGGgaGGCAc- -3'
miRNA:   3'- agUCGGugCuCUGGGUCCagUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 154403 0.66 0.971525
Target:  5'- -uGGCCugG-GACCCGGGgaGGCAc- -3'
miRNA:   3'- agUCGGugCuCUGGGUCCagUUGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.