miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 5' -53.8 NC_006146.1 + 3897 0.66 0.968575
Target:  5'- -aGGCCcaccgACGAGGCCCccaAGGUCu-CGGGu -3'
miRNA:   3'- agUCGG-----UGCUCUGGG---UCCAGuuGUUC- -5'
28829 5' -53.8 NC_006146.1 + 4373 0.68 0.926667
Target:  5'- aCGGCCccGCGGGcucCCCAGGcCGACGc- -3'
miRNA:   3'- aGUCGG--UGCUCu--GGGUCCaGUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 5670 0.69 0.875926
Target:  5'- cCAGCCGCGGGugCUucuGaUUAGCGAGg -3'
miRNA:   3'- aGUCGGUGCUCugGGu--CcAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 6432 0.68 0.931927
Target:  5'- -gGGCCAUGuGGGCCCugGGGUCcAUggGg -3'
miRNA:   3'- agUCGGUGC-UCUGGG--UCCAGuUGuuC- -5'
28829 5' -53.8 NC_006146.1 + 8634 0.67 0.954607
Target:  5'- --cGCCccaGCGAGcCCCAGGaaAACAGGc -3'
miRNA:   3'- aguCGG---UGCUCuGGGUCCagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 11017 0.66 0.965414
Target:  5'- cCGGCCuCGAGGCCCucugCGAgGAGa -3'
miRNA:   3'- aGUCGGuGCUCUGGGuccaGUUgUUC- -5'
28829 5' -53.8 NC_006146.1 + 12745 0.66 0.965414
Target:  5'- cCAGCC-CaGAGGCCCgAGGUuggagcCGGCGGGc -3'
miRNA:   3'- aGUCGGuG-CUCUGGG-UCCA------GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 13396 0.75 0.562135
Target:  5'- gCGGCCACG-GACugccucagCCAGGUCuGCAAGg -3'
miRNA:   3'- aGUCGGUGCuCUG--------GGUCCAGuUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 13939 0.68 0.921162
Target:  5'- -gGGCC-CGGGggaGCCCAGGacaacuuuaUCAGCGAGc -3'
miRNA:   3'- agUCGGuGCUC---UGGGUCC---------AGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 14556 0.66 0.958435
Target:  5'- gCGGCC-CuGGACCCAGGa-AACGGGu -3'
miRNA:   3'- aGUCGGuGcUCUGGGUCCagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 14850 0.68 0.931927
Target:  5'- -gGGCCGCggGAGGCCgAGGgggCAGCcAGg -3'
miRNA:   3'- agUCGGUG--CUCUGGgUCCa--GUUGuUC- -5'
28829 5' -53.8 NC_006146.1 + 15824 0.66 0.965414
Target:  5'- cCAGCC-CaGAGGCCCgAGGUuggagcCGGCGGGc -3'
miRNA:   3'- aGUCGGuG-CUCUGGG-UCCA------GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 16009 0.68 0.921162
Target:  5'- gUCAGCCcggGCGAGGCCCugcccccCGACGGGc -3'
miRNA:   3'- -AGUCGG---UGCUCUGGGucca---GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 16537 0.68 0.931927
Target:  5'- -gAGCCACGAGACCgAccagauGGaCAGCAu- -3'
miRNA:   3'- agUCGGUGCUCUGGgU------CCaGUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 17634 0.66 0.958435
Target:  5'- gCGGCC-CuGGACCCAGGa-AACGGGu -3'
miRNA:   3'- aGUCGGuGcUCUGGGUCCagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 18259 0.66 0.968575
Target:  5'- aCAGCCugGGGAgCgUGGGUCAGg--- -3'
miRNA:   3'- aGUCGGugCUCU-GgGUCCAGUUguuc -5'
28829 5' -53.8 NC_006146.1 + 18902 0.66 0.965414
Target:  5'- cCAGCC-CaGAGGCCCgAGGUuggagcCGGCGGGc -3'
miRNA:   3'- aGUCGGuG-CUCUGGG-UCCA------GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 20712 0.66 0.958435
Target:  5'- gCGGCC-CuGGACCCAGGa-AACGGGu -3'
miRNA:   3'- aGUCGGuGcUCUGGGUCCagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 21979 0.66 0.965414
Target:  5'- cCAGCC-CaGAGGCCCgAGGUuggagcCGGCGGGc -3'
miRNA:   3'- aGUCGGuG-CUCUGGG-UCCA------GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 23459 0.72 0.755443
Target:  5'- cUCGGCCuACGAGGCCCuGGcCGugGc- -3'
miRNA:   3'- -AGUCGG-UGCUCUGGGuCCaGUugUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.